View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_high_5 (Length: 386)
Name: NF14248_high_5
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_high_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 31737203 - 31737579
Alignment:
| Q |
13 |
cagaacagagaatccattggttcatgatgttgagtttcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggt |
112 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31737203 |
cagaactgagaatcctttggttcatgatgttgagtttcttcatcaaatggcagttgtttcaccattattatcacgaactaaatactctgataaatttggt |
31737302 |
T |
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| Q |
113 |
atcacctctgcttctacaatgtgaatgaatcaggaaaagaaggtgaaagtagctttgttgaaaggaaagagattatcataaattttgtctagagtagtag |
212 |
Q |
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| T |
31737303 |
atcacctctgcttctacaatgtgaatgaatcaggaaaagaaggtgaaagtagctttgttgaaaggaaagagattatcataaattttgcctagagtagtag |
31737402 |
T |
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| Q |
213 |
ttaaatttttgggga---attattatattctttgtagagcgtaattggtaaagtttaaaatgtaaatgtagatacatatatgcgagcttcatagactcaa |
309 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31737403 |
ttaaatttttgtggaattattattatattctttgtagagcgtaattggtaaagtttaaaatgtaaatgtagatacatatatgtgagcttcatagactcaa |
31737502 |
T |
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| Q |
310 |
aatacgtctttttgtacataacaaattttgttgtgtaagccaatatggctggctatactcttctggactggtctagt |
386 |
Q |
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| T |
31737503 |
aatacgtctttttgtacataacaaattttgttgtgtaagccaatatggctggctatactcttctggactggtctagt |
31737579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 31702846 - 31703176
Alignment:
| Q |
13 |
cagaacagagaatccattggttcatgatgttgagtttcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggt |
112 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31702846 |
cagaactgagaatcctttggttcatgatgttgagtttcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggt |
31702945 |
T |
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| Q |
113 |
atcacctctgcttctacaatgtgaatgaatcaggaaaagaaggtgaaagtagctttgttgaaaggaaagagattatcataaattttgtctagagtagtag |
212 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |
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| T |
31702946 |
atcacctctgcttctacaatg----tgaattaggaaaagaaggtgaaagtagctttgttgaatgggaagagattatcataaattttgcctagagtagtag |
31703041 |
T |
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| Q |
213 |
ttaaatttttgggga---attattatattctttgtagagcgtaattggtaaagtttaaaatgtaaatgtagatacatatatgcgagcttcatagactcaa |
309 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
31703042 |
ttaaatttttgtggaattattattatattctttgtagagcgtaattagtaatgcttaaaatgtaaatgtagatac--atatgtgagcttcatagactcaa |
31703139 |
T |
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| Q |
310 |
aatacgtctttttgtacataacaaattttgttgtgtaagc |
349 |
Q |
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|| | |||||||||||||||||||||||||||||||| |
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| T |
31703140 |
gat---tttttttgtacataacaaattttgttgtgtaagc |
31703176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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