View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_low_10 (Length: 346)
Name: NF14248_low_10
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 9681796 - 9682115
Alignment:
| Q |
10 |
aagaatatacgagatttgagcaccaagttttgttagaacctcaactccggttcaaaagaaaacatatgtgaaaaatgtaaacaaagaacacactagattt |
109 |
Q |
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| T |
9681796 |
aagaatatacgagatttgagcaccaagttttgttagaacctcaaccccggttcaaaagaaaacatatgtgaaaaatgtaaacaaagaacacactagattt |
9681895 |
T |
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| Q |
110 |
taacacggaattcggccaattgggcctatctctcggactgttgtgtggctacagagcctttctattattcaagcttagagtttacaaattacgacctgtg |
209 |
Q |
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| T |
9681896 |
gaacacggaattcggccaattgggcctatctctcggactgttgtgtggctacagagcctttctattattcaagcttagagtttacaaattacgacctgtg |
9681995 |
T |
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| Q |
210 |
-ttaaatatggtccagtttacaagattacttacctcttaaccgacctgtccacttatcggtaactatgagttgtatccaacaagttgagtcaaatttaaa |
308 |
Q |
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| T |
9681996 |
tttaaatatggtccagtttacaagattacttacctcttaaccgacctgtccacttatcggtaactatgagttgtatccaacaagttgagtcaaatttaaa |
9682095 |
T |
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| Q |
309 |
ttctagttgataagtggtat |
328 |
Q |
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| T |
9682096 |
ttctagttgataagtggtat |
9682115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 11319416 - 11319381
Alignment:
| Q |
166 |
cctttctattattcaagcttagagtttacaaattac |
201 |
Q |
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| T |
11319416 |
cctttctattattcaagcttagagtttacagattac |
11319381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 37348105 - 37348156
Alignment:
| Q |
51 |
caactccggttcaaaagaaaacatatgtgaaaaatgtaaacaaagaacacac |
102 |
Q |
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| T |
37348105 |
caacaccggttcaaaagaaaacatatatgaaaaccgtagacaaagaacacac |
37348156 |
T |
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