View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14248_low_12 (Length: 341)

Name: NF14248_low_12
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14248_low_12
NF14248_low_12
[»] chr2 (1 HSPs)
chr2 (31-323)||(44032744-44033036)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 31 - 323
Target Start/End: Complemental strand, 44033036 - 44032744
Alignment:
Q  31 acattcacaaaaaccatgagagcataggtgtctgttttgagtgccttcaccactacggttttaatggcacaaaacgcaagcatttctgctttgaatatcc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44033036 acattcacaaaaaccatgagagcataggtgtctgttttgagtgccttcaccactacggttttaatggcacaaaacgcaagcatttctgctttgaatatcc 44032937  T
Q  131 tccatgttgacttctagtggatgagcaatggtgttatttagggaaaccgaaattgaatatcaatatggacatcattaaatctatagaactacgatgatac 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44032936 tccatgttgacttctagtggatgagcaatggtgttatttagggaaaccgaaattgaatatcaatatggacatcattaaatctatagaactacgatgatac 44032837  T
Q  231 attagagtcacgaggggtatattccaaggataaactcctccacttacactcaccaccatgttactcaaagctagctaattattttgtcccttc 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44032836 attagagtcacgaggggtatattccaaggataaactcctccacttacactcaccaccatgttactcaaagctagctaattattttgtcccttc 44032744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University