View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_low_15 (Length: 296)
Name: NF14248_low_15
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 28789438 - 28789160
Alignment:
| Q |
18 |
cacggtaggcctggtatcggtgctactaactcctccaggtttattcctctcaagtgaagactctcatcaatgccctccttctatatttcaatgcaaattt |
117 |
Q |
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| T |
28789438 |
cacggtaggcctggtatcggtgctactaactcctccaggtttattcctctcaagtgaagactctcatcaatgccctccttctacatttcaatgcaaattt |
28789339 |
T |
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| Q |
118 |
ttgcttgttttacttgaactatttaattaattcatttctatttgttaccgttatcaaatttagggatatcagtgaactaaaactttgggtttaaattgtc |
217 |
Q |
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| T |
28789338 |
ttgcttgttttacttgaactatttaattaattcatttctatttgttactgttatcaaatttagggatatcagtgaactaaaactttgggtttaaattgtc |
28789239 |
T |
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| Q |
218 |
tgttgatggtttttggagtttttgtttgattaaatttatatgcttgtccatcctcaaattttgaccaatcaatcaattt |
296 |
Q |
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| T |
28789238 |
tattgatgctttttggagtttttgtttgattaaatttatatgcttctccgtcctcaaattttgaccaatcaatcaattt |
28789160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 31247978 - 31248198
Alignment:
| Q |
21 |
ggtaggcctggtatcggtgctactaactcctccaggtttattcctctcaagtgaagactctcatcaatgccctccttctatatttcaatgcaaatttttg |
120 |
Q |
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| T |
31247978 |
ggtaggcctggtattggtgccactcactcctccaggtttattcctctcaagtgaagatcgtcatcgatgc---ccctctatcttttaatgcaaacttttg |
31248074 |
T |
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| Q |
121 |
cttgttttacttgaactatttaattaattcatttctatttgttaccgttatcaaatttagggatatcagtgaactaaaactttgggtttaaattgtctgt |
220 |
Q |
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| T |
31248075 |
cttgttttactggaactatttaaatgctccatttctatttgatattgttatgacaat--aggatatcagtgaactaaagttttgggtttaaattgtctat |
31248172 |
T |
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| Q |
221 |
tgat--ggtttttggagtttttgttt |
244 |
Q |
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| || | |||||||||||||||||| |
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| T |
31248173 |
ttatgagctttttggagtttttgttt |
31248198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 44325859 - 44325802
Alignment:
| Q |
18 |
cacggtaggcctggtatcggtgctactaactcctccaggtttattcctctcaagtgaa |
75 |
Q |
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| T |
44325859 |
cacggtagacctggtattggtgctactcactcctccaggttcattcctctcaagtgaa |
44325802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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