View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_low_2 (Length: 560)
Name: NF14248_low_2
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 108 - 429
Target Start/End: Complemental strand, 41689880 - 41689548
Alignment:
| Q |
108 |
ataaataaagtattattaaattggttgattatggaataaaattaaattccctaatgacacattaaaaa-taccaaagtgtcacaaatagagcaaagaaat |
206 |
Q |
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| T |
41689880 |
ataaataaagtattattaaattggttgattatggaataaaattaaattccctaatgacacattaaaaaataccaaagtgtcacaaatagagcaaggaaat |
41689781 |
T |
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| Q |
207 |
tcaccagattctttggcataaaatctgagtgtatatata-cttcttcnnnnnnnnnn-----------tataacttttaatttaattatagatcaatctc |
294 |
Q |
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| T |
41689780 |
tcgccacattctttggcataaaatctgagtatatatataacttcttcaaaaaaatatatatatatatatataacttttaatttaattatagatcaatctc |
41689681 |
T |
|
| Q |
295 |
agattagcaaaactcaaaatattcaagattgatctcgatttttccaacagcaatacaacaatattatcaatatgtggttcgataatactgaaatcatatg |
394 |
Q |
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| T |
41689680 |
agattagcaaaactcaaaatattcaagattgatctcgatttttccaacagcaatgcaacaatattatca--atgtggttcgataatactgaaatcatatg |
41689583 |
T |
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| Q |
395 |
ccaaagtcaatcaaaagataacaagtgctggagtg |
429 |
Q |
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| T |
41689582 |
ccaaagtcaatcaaaagataacaagtgcaggagtg |
41689548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 41690113 - 41690012
Alignment:
| Q |
17 |
aaaatcaagaatataattttagaatcaacaaaattctgggcgtatatgaaatcgtgattttattccataaataaagtattatttttgaggaataaataaa |
116 |
Q |
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| T |
41690113 |
aaaatcaagaatataattttagaatcaacaaaattctgggcgtatatgaaatcgtgattttattcaataaataaagtattatttttgaggaataaataaa |
41690014 |
T |
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| Q |
117 |
gt |
118 |
Q |
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|| |
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| T |
41690013 |
gt |
41690012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 453 - 551
Target Start/End: Complemental strand, 41689523 - 41689412
Alignment:
| Q |
453 |
gtacaacaagtgctcttgttgtcatacaatggagacaaaacaaaaaa-------------caggttgaatgcccaaattgatatctaagaggaaccttac |
539 |
Q |
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| T |
41689523 |
gtacaacaagtgctcttgttgtcatacaacggagacaaaaaaaaaaaaaaaaaaaaaaaacaggttgaatgcccaaattgatatctaagaggaaccttac |
41689424 |
T |
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| Q |
540 |
tatattcttcga |
551 |
Q |
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||| || ||||| |
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| T |
41689423 |
tatttttttcga |
41689412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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