View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_low_22 (Length: 221)
Name: NF14248_low_22
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 3611988 - 3612169
Alignment:
| Q |
16 |
ctttttgtttatttcagttagattgaatataaaaagccttctctgttcattgcttaaattatacagttaattaagtgattagcactaaaattgttctatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3611988 |
ctttttgtttatttcagttagattgaatataaaaagccttctctattcattgcttaaattaaacagttaattaagtgattagcactaaaattgttctatg |
3612087 |
T |
|
| Q |
116 |
gaacccataagttcattctgatcaagatagtcttttgtaatctaaggtgannnnnnnngttgtacaaatctaaggtaattttt |
198 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
3612088 |
gaacccataagttcattctgatcaagatagtc-ttagtaatctaaggtgattttttttgttgtacaaatctaaggtaattttt |
3612169 |
T |
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