View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14248_low_24 (Length: 205)

Name: NF14248_low_24
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14248_low_24
NF14248_low_24
[»] chr1 (36 HSPs)
chr1 (15-141)||(15165576-15165698)
chr1 (143-205)||(2430503-2430565)
chr1 (143-205)||(3572568-3572630)
chr1 (143-205)||(36361789-36361851)
chr1 (143-202)||(14788733-14788792)
chr1 (143-205)||(1597345-1597407)
chr1 (143-205)||(2632859-2632921)
chr1 (143-205)||(5806294-5806356)
chr1 (143-205)||(6978777-6978839)
chr1 (143-205)||(9115844-9115906)
chr1 (143-205)||(25789770-25789832)
chr1 (143-205)||(39930464-39930526)
chr1 (143-205)||(46666715-46666777)
chr1 (144-203)||(38964683-38964742)
chr1 (143-202)||(39329618-39329677)
chr1 (143-202)||(52630783-52630842)
chr1 (143-205)||(6911500-6911562)
chr1 (143-205)||(8332021-8332083)
chr1 (143-205)||(9831873-9831935)
chr1 (143-205)||(20260089-20260151)
chr1 (143-205)||(47037464-47037526)
chr1 (143-205)||(49822920-49822982)
chr1 (143-202)||(35187466-35187525)
chr1 (143-205)||(12190180-12190242)
chr1 (143-205)||(32824929-32824991)
chr1 (143-201)||(51445083-51445141)
chr1 (143-203)||(32202334-32202394)
chr1 (147-205)||(4683381-4683439)
chr1 (143-205)||(5518507-5518569)
chr1 (143-202)||(1007757-1007816)
chr1 (143-205)||(48916025-48916087)
chr1 (143-205)||(50190768-50190830)
chr1 (149-203)||(37436630-37436684)
chr1 (142-191)||(31806758-31806807)
chr1 (146-195)||(52699472-52699521)
chr1 (146-202)||(13653861-13653917)
[»] chr4 (34 HSPs)
chr4 (143-205)||(48518894-48518956)
chr4 (143-202)||(39730296-39730355)
chr4 (143-205)||(45747799-45747861)
chr4 (143-199)||(25916038-25916094)
chr4 (143-205)||(13229992-13230054)
chr4 (143-205)||(27762902-27762964)
chr4 (143-205)||(40435910-40435972)
chr4 (143-205)||(48879335-48879397)
chr4 (143-202)||(6279924-6279983)
chr4 (143-202)||(27555423-27555482)
chr4 (143-202)||(34049600-34049659)
chr4 (143-202)||(55968003-55968062)
chr4 (143-205)||(23686797-23686859)
chr4 (144-202)||(27942756-27942814)
chr4 (143-205)||(35999696-35999758)
chr4 (143-205)||(41859050-41859112)
chr4 (144-200)||(34237424-34237480)
chr4 (143-203)||(39835310-39835370)
chr4 (143-202)||(18931766-18931825)
chr4 (143-202)||(39498838-39498897)
chr4 (143-202)||(39502177-39502236)
chr4 (143-205)||(18405237-18405299)
chr4 (143-205)||(25932451-25932513)
chr4 (143-205)||(32953533-32953595)
chr4 (143-205)||(41744223-41744285)
chr4 (143-205)||(42773958-42774020)
chr4 (143-205)||(43723274-43723336)
chr4 (143-205)||(47670372-47670434)
chr4 (146-205)||(45596278-45596337)
chr4 (143-201)||(936140-936198)
chr4 (143-202)||(30415915-30415974)
chr4 (152-202)||(8322258-8322308)
chr4 (145-202)||(10400810-10400867)
chr4 (143-202)||(50672911-50672967)
[»] scaffold0006 (2 HSPs)
scaffold0006 (143-205)||(201931-201993)
scaffold0006 (146-202)||(143622-143678)
[»] chr8 (25 HSPs)
chr8 (143-205)||(18726622-18726684)
chr8 (143-202)||(1554357-1554416)
chr8 (146-205)||(3050015-3050074)
chr8 (142-205)||(26601940-26602003)
chr8 (143-205)||(12710651-12710713)
chr8 (143-205)||(25837917-25837979)
chr8 (143-205)||(32660936-32660998)
chr8 (143-205)||(35818427-35818489)
chr8 (147-205)||(37392553-37392611)
chr8 (143-205)||(38364087-38364149)
chr8 (145-201)||(18298122-18298178)
chr8 (143-205)||(10896220-10896282)
chr8 (143-201)||(16313510-16313568)
chr8 (143-205)||(41228717-41228779)
chr8 (143-205)||(42755873-42755935)
chr8 (143-202)||(38132740-38132799)
chr8 (144-202)||(7931248-7931306)
chr8 (143-201)||(26062154-26062212)
chr8 (145-202)||(40197081-40197138)
chr8 (143-193)||(5020493-5020543)
chr8 (143-190)||(33444629-33444676)
chr8 (143-205)||(7317379-7317441)
chr8 (143-181)||(8635664-8635702)
chr8 (143-205)||(21137135-21137197)
chr8 (145-202)||(35394399-35394456)
[»] chr7 (32 HSPs)
chr7 (143-205)||(9946993-9947055)
chr7 (143-205)||(33378848-33378910)
chr7 (143-205)||(48314128-48314190)
chr7 (143-205)||(48341368-48341430)
chr7 (143-202)||(9814221-9814280)
chr7 (143-202)||(48160594-48160653)
chr7 (143-205)||(8419592-8419654)
chr7 (143-205)||(11329999-11330061)
chr7 (143-205)||(27213858-27213920)
chr7 (143-205)||(27248299-27248361)
chr7 (143-205)||(38544200-38544262)
chr7 (143-205)||(39554189-39554251)
chr7 (143-205)||(40212895-40212957)
chr7 (143-205)||(43949251-43949313)
chr7 (143-205)||(45045632-45045694)
chr7 (143-204)||(25098076-25098137)
chr7 (145-205)||(25924642-25924702)
chr7 (143-205)||(27419227-27419289)
chr7 (143-205)||(35488192-35488254)
chr7 (144-202)||(38396370-38396428)
chr7 (143-205)||(45265051-45265113)
chr7 (144-198)||(45448955-45449009)
chr7 (143-202)||(44566054-44566113)
chr7 (143-205)||(41632367-41632429)
chr7 (143-205)||(45723213-45723275)
chr7 (143-202)||(28904189-28904248)
chr7 (143-205)||(34930468-34930531)
chr7 (143-205)||(16825357-16825419)
chr7 (143-199)||(44820266-44820322)
chr7 (143-202)||(41684025-41684084)
chr7 (136-201)||(6656220-6656285)
chr7 (143-203)||(25045621-25045680)
[»] chr6 (10 HSPs)
chr6 (143-205)||(7053573-7053635)
chr6 (143-205)||(14171019-14171081)
chr6 (143-205)||(1317024-1317086)
chr6 (143-201)||(2657710-2657768)
chr6 (143-205)||(8029339-8029401)
chr6 (143-205)||(18897927-18897989)
chr6 (147-202)||(16968934-16968989)
chr6 (143-205)||(7344086-7344148)
chr6 (143-176)||(10246225-10246258)
chr6 (143-191)||(10849786-10849834)
[»] chr5 (20 HSPs)
chr5 (143-205)||(4765563-4765625)
chr5 (143-205)||(12970533-12970595)
chr5 (143-205)||(19065508-19065570)
chr5 (143-205)||(18412215-18412277)
chr5 (143-205)||(22935915-22935977)
chr5 (143-205)||(28602561-28602623)
chr5 (143-202)||(555709-555768)
chr5 (142-205)||(11855657-11855720)
chr5 (143-205)||(14206824-14206886)
chr5 (144-205)||(6091721-6091782)
chr5 (143-202)||(29543018-29543077)
chr5 (143-205)||(27481363-27481425)
chr5 (143-202)||(32535946-32536005)
chr5 (143-202)||(36703883-36703942)
chr5 (146-205)||(8406900-8406959)
chr5 (161-202)||(8646412-8646453)
chr5 (143-201)||(6930654-6930712)
chr5 (143-195)||(20962606-20962658)
chr5 (143-191)||(26637046-26637094)
chr5 (143-191)||(42012182-42012230)
[»] chr3 (23 HSPs)
chr3 (143-205)||(24574581-24574643)
chr3 (143-205)||(26849028-26849090)
chr3 (143-205)||(40908271-40908333)
chr3 (143-205)||(6231504-6231566)
chr3 (143-205)||(8476311-8476373)
chr3 (143-201)||(9320451-9320509)
chr3 (143-205)||(11239123-11239185)
chr3 (143-205)||(28124439-28124501)
chr3 (143-205)||(44952314-44952376)
chr3 (144-205)||(33217917-33217978)
chr3 (143-205)||(20297799-20297861)
chr3 (143-205)||(47114860-47114922)
chr3 (142-205)||(48339759-48339822)
chr3 (143-201)||(1099208-1099266)
chr3 (143-205)||(20414468-20414530)
chr3 (143-202)||(43715311-43715370)
chr3 (143-205)||(31435926-31435988)
chr3 (143-205)||(43132160-43132222)
chr3 (159-202)||(31611004-31611047)
chr3 (143-186)||(29512704-29512747)
chr3 (148-203)||(53165733-53165788)
chr3 (167-201)||(9320407-9320441)
chr3 (143-191)||(45826796-45826844)
[»] chr2 (32 HSPs)
chr2 (143-205)||(346348-346410)
chr2 (143-205)||(39995134-39995196)
chr2 (143-202)||(21737403-21737462)
chr2 (143-205)||(6171797-6171859)
chr2 (143-205)||(9733849-9733911)
chr2 (143-205)||(11071611-11071673)
chr2 (143-205)||(41729133-41729195)
chr2 (143-205)||(42674664-42674726)
chr2 (145-205)||(5770115-5770175)
chr2 (134-201)||(2050876-2050943)
chr2 (143-202)||(34356703-34356762)
chr2 (143-202)||(37192531-37192590)
chr2 (143-202)||(37533961-37534020)
chr2 (143-205)||(14777501-14777563)
chr2 (144-205)||(28311701-28311762)
chr2 (144-202)||(638602-638660)
chr2 (143-205)||(2521681-2521743)
chr2 (143-205)||(4559565-4559627)
chr2 (143-205)||(20426486-20426548)
chr2 (143-205)||(41750535-41750597)
chr2 (145-202)||(26310278-26310335)
chr2 (144-205)||(37233435-37233496)
chr2 (143-203)||(40950862-40950922)
chr2 (143-202)||(17965992-17966051)
chr2 (143-205)||(45409256-45409318)
chr2 (142-195)||(13760961-13761014)
chr2 (143-202)||(27357966-27358025)
chr2 (144-205)||(14832816-14832877)
chr2 (147-205)||(6571693-6571751)
chr2 (143-186)||(40570045-40570088)
chr2 (143-205)||(1988317-1988379)
chr2 (143-205)||(18713660-18713722)
[»] scaffold0189 (1 HSPs)
scaffold0189 (145-205)||(28957-29017)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 15165576 - 15165698
Alignment:
Q  15 ctctcttaaaatttgacatctgtctctaaatagagcatgtgacctaatgtattagcagctcaataattgtttgtaccatacaattattctctttaaccta 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||  |||||||||||||||||||||||||||    
T  15165576 ctctcttaaaatttgacatctgtctctaaatagaacatgtgacctaatgtat----agctcaataattgttcataccatacaattattctctttaaccta 15165671  T
Q  115 gcattttctttgattcaccttataaat 141  Q
    ||||||||||||| |||||||||||||    
T  15165672 gcattttctttgaatcaccttataaat 15165698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 2430565 - 2430503
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2430565 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 2430503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 3572568 - 3572630
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3572568 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 3572630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 36361851 - 36361789
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36361851 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 36361789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 14788792 - 14788733
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14788792 tgtgtttgtttcaagttataatttttgattcccgggaataaaataataggaatgtatatg 14788733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 1597345 - 1597407
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  1597345 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatgcct 1597407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 2632921 - 2632859
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  2632921 tgtgtttgtttcaagttataattgttgattcccgggaataaaataataggaatgtatatgcct 2632859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 5806294 - 5806356
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  5806294 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 5806356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 6978839 - 6978777
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  6978839 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 6978777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 9115906 - 9115844
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  9115906 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 9115844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 25789832 - 25789770
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  25789832 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 25789770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 39930526 - 39930464
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  39930526 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 39930464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 46666777 - 46666715
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  46666777 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 46666715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 38964683 - 38964742
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgc 203  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  38964683 gtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgc 38964742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 39329677 - 39329618
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  39329677 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatg 39329618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 52630842 - 52630783
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  52630842 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtatatg 52630783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 6911562 - 6911500
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  6911562 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgataagaatgtatatgcct 6911500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 8332083 - 8332021
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  8332083 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtatatgcct 8332021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 9831873 - 9831935
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  9831873 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagaaatgtatatgcct 9831935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 20260089 - 20260151
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||    
T  20260089 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgattggaatgtatatgcct 20260151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 47037526 - 47037464
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  47037526 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatatatatgcct 47037464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 49822920 - 49822982
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||    
T  49822920 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatatgcct 49822982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 35187525 - 35187466
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  35187525 tgtgtttttttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatg 35187466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 12190180 - 12190242
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| ||||||    
T  12190180 tgtgtttgtttcaagttataattgttgattttcgggaataaaatgataggaatgtacatgcct 12190242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 32824991 - 32824929
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||    
T  32824991 tgtgtttgtttcaagttataattgttgatttccggaaataaaataataggaatgtatatgcct 32824929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 51445083 - 51445141
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  51445083 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtatat 51445141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 32202334 - 32202394
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgc 203  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||||||    
T  32202334 tgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtatatgc 32202394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 4683381 - 4683439
Alignment:
Q  147 tttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||    
T  4683381 tttgtttcaatttataattgttgattcccagaaataaaatgataggaatgtatatgcct 4683439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 5518507 - 5518569
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||| ||| |||||||||    
T  5518507 tgtgtttgtttcaagttatatttgttgattcccaggaataaaatgatagaaatatatatgcct 5518569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 1007816 - 1007757
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||| |||| ||||||    
T  1007816 tgtgtttgtttcaagttatatttgttgattcccgagaataaaatgatatgaatatatatg 1007757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 48916025 - 48916087
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||| |||||||||||| || |||||||| | |||||||||||||| |||||||||||||    
T  48916025 tgtgtttatttcaagttatatttgttgattccagagaataaaatgatagaaatgtatatgcct 48916087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 50190768 - 50190830
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||| ||||||| || ||| |||| ||||||||| |||||||||||||||||    
T  50190768 tgtgtttgtttcaagatataattgttaatttccggaaataaaatgctaggaatgtatatgcct 50190830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 37436630 - 37436684
Alignment:
Q  149 tgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgc 203  Q
    ||||||| |||||| || ||||||| || ||||||||||||||||||||||||||    
T  37436630 tgtttcatgttatatttgttgattcacgagaataaaatgataggaatgtatatgc 37436684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 31806758 - 31806807
Alignment:
Q  142 atgtgtttgtttcaagttataatttttgattcccgggaataaaatgatag 191  Q
    ||||||||||||||||||||| || | |||||| | ||||||||||||||    
T  31806758 atgtgtttgtttcaagttatatttgtagattcctgagaataaaatgatag 31806807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 52699472 - 52699521
Alignment:
Q  146 gtttgtttcaagttataatttttgattcccgggaataaaatgataggaat 195  Q
    ||||||||||||||||| |  | |||||| ||||||||||||||||||||    
T  52699472 gtttgtttcaagttatattcgtagattcctgggaataaaatgataggaat 52699521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 13653917 - 13653861
Alignment:
Q  146 gtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||| | || |||||||| | |||||||||||||| ||| ||||||    
T  13653917 gtttgtttcaagttaaatttgttgattcctgagaataaaatgatagaaatatatatg 13653861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 48518894 - 48518956
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48518894 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 48518956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 39730296 - 39730355
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39730296 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 39730355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 45747799 - 45747861
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45747799 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 45747861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 25916038 - 25916094
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25916038 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtat 25916094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 13229992 - 13230054
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  13229992 tgtgtttgtttcaagttataattttttattcccgggaataaaatgatagaaatgtatatgcct 13230054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 27762902 - 27762964
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  27762902 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 27762964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 40435972 - 40435910
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  40435972 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 40435910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 48879397 - 48879335
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  48879397 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 48879335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 6279924 - 6279983
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  6279924 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatatgaatgtatatg 6279983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 27555482 - 27555423
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  27555482 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgataggaatgtatatg 27555423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 34049600 - 34049659
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  34049600 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtatatg 34049659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 55968003 - 55968062
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  55968003 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatg 55968062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 23686859 - 23686797
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  23686859 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatatatatgcct 23686797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 27942814 - 27942756
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  27942814 gtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtatatg 27942756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 35999758 - 35999696
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||    
T  35999758 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatatgcct 35999696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 41859050 - 41859112
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  41859050 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtatatgcct 41859112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 34237424 - 34237480
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtata 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  34237424 gtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtata 34237480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 39835310 - 39835370
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgc 203  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  39835310 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtatatgc 39835370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 18931825 - 18931766
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  18931825 tgtgtttgtttcaagttataattgttgatttctgggaataaaatgataggaatgtatatg 18931766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 39498897 - 39498838
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  39498897 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtatatg 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 39502236 - 39502177
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  39502236 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtatatg 39502177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 18405237 - 18405299
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||||||    
T  18405237 tgtgtttgtttcaagttataattgttgattcccgagaataaaattatagaaatgtatatgcct 18405299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 25932513 - 25932451
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||| |||||||||||||    
T  25932513 tgtgtttgtttcaagttataattgttgattcctaggaataaaatgatagaaatgtatatgcct 25932451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 32953595 - 32953533
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  32953595 tgtgtttgtctcaagttataattgttgattcccaggaacaaaatgataggaatgtatatgcct 32953533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 41744223 - 41744285
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  41744223 tgtgtttatttcaagttataattgttgatttccgggaataaaatgatagaaatgtatatgcct 41744285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 42774020 - 42773958
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||    
T  42774020 tgtgtttgtttcaagttataattgttgatttctgggaataaaatgattggaatgtatatgcct 42773958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 43723336 - 43723274
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||||||||    
T  43723336 tgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtatatgcct 43723274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 47670434 - 47670372
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||    
T  47670434 tgtgtttgtttcaagttataattgttgattcctggaaataaaatgatagaaatgtatatgcct 47670372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 45596337 - 45596278
Alignment:
Q  146 gtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||| |||||||||||||    
T  45596337 gtttgtttcaagttataattgttgattttcgggaataaaatgatagaaatgtatatgcct 45596278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 936198 - 936140
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||    
T  936198 tgtgtttgtttcaagttataattgttgattcccgagaataaaatgattggaatatatat 936140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 30415974 - 30415915
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||||| || ||||||||||  ||||||||||||||||| ||||||    
T  30415974 tgtgtttgtttcaagttatatttgttgattcccgataataaaatgataggaatatatatg 30415915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 8322308 - 8322258
Alignment:
Q  152 ttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  8322308 ttcaagttataattgttgattcctgggaataaaatgatagaaatgtatatg 8322258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 10400810 - 10400867
Alignment:
Q  145 tgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||| || ||||||   |||||||||||||||| ||||||||||    
T  10400810 tgtttgtttcaagttatatttgttgatttttgggaataaaatgatagaaatgtatatg 10400867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 50672911 - 50672967
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||| ||||||  ||| |||||||| |||||||||||||||||||||||||||    
T  50672911 tgtgtttgttttaagtta--attgttgattcc-gggaataaaatgataggaatgtatatg 50672967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 201993 - 201931
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  201993 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 201931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 143678 - 143622
Alignment:
Q  146 gtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||| | || |||||||| | |||||||||||||| ||| ||||||    
T  143678 gtttgtttcaagttaaatttgttgattcctgagaataaaatgatagaaatatatatg 143622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 18726622 - 18726684
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18726622 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 18726684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 1554357 - 1554416
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1554357 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatg 1554416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 3050074 - 3050015
Alignment:
Q  146 gtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3050074 gtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 3050015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 26601940 - 26602003
Alignment:
Q  142 atgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  26601940 atgtgtttgtttcaaattataattgttgattcccgggaataaaatgataggaatgtatatgcct 26602003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 12710713 - 12710651
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  12710713 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 12710651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 25837979 - 25837917
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  25837979 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtacatgcct 25837917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 32660936 - 32660998
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  32660936 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtatatgcct 32660998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 35818427 - 35818489
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  35818427 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 35818489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 37392553 - 37392611
Alignment:
Q  147 tttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37392553 tttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 37392611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 38364149 - 38364087
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  38364149 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 38364087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 18298178 - 18298122
Alignment:
Q  145 tgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18298178 tgtttgtttcaagttataatttttgattctcgggaataaaatgataggaatgtatat 18298122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 10896220 - 10896282
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  10896220 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagaaatgtatatgcct 10896282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 16313510 - 16313568
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  16313510 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatat 16313568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 41228717 - 41228779
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||    
T  41228717 tgtgtttgtttcaagttataattgttaattcccgggaataaaatggtaggaatgtatatgcct 41228779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 42755935 - 42755873
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  42755935 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgatagaaatgtatatgcct 42755873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 38132740 - 38132799
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  38132740 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatatg 38132799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 7931306 - 7931248
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  7931306 gtgtttgtttcaagttataattgttgattcctgggaataaaatgatagaaatgtatatg 7931248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 26062212 - 26062154
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  26062212 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatat 26062154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 40197081 - 40197138
Alignment:
Q  145 tgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  40197081 tgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtatatg 40197138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 5020493 - 5020543
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgatagga 193  Q
    |||||||||||||||||||| || |||||||  ||||||||||||||||||    
T  5020493 tgtgtttgtttcaagttatatttgttgattcatgggaataaaatgatagga 5020543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 33444629 - 33444676
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgata 190  Q
    |||||||||||||||||||| || |||||||| | |||||||||||||    
T  33444629 tgtgtttgtttcaagttatatttgttgattcctgagaataaaatgata 33444676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 7317441 - 7317379
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| || ||||||  |   ||||||||||||||||| |||||||||    
T  7317441 tgtgtttgtttcaagttatatttgttgattttcaaaaataaaatgataggaatatatatgcct 7317379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 8635702 - 8635664
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaat 181  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  8635702 tgtgtttgtttcaagttataattgttgattcccaggaat 8635664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 21137135 - 21137197
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||| |||||||| || |||||||| | ||||||||| |||| ||| |||||||||    
T  21137135 tgtgtttgtttgaagttatatttgttgattcctgagaataaaataatagaaatatatatgcct 21137197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 35394456 - 35394399
Alignment:
Q  145 tgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||| || ||||||| || ||||||||||| || ||| ||||||    
T  35394456 tgtttgtttcaagttatatttattgattcacgagaataaaatgaaagaaatatatatg 35394399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 9946993 - 9947055
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9946993 tgtgtttgtttaaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 9947055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 33378910 - 33378848
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33378910 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 33378848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 48314190 - 48314128
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48314190 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 48314128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 48341430 - 48341368
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48341430 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 48341368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 9814221 - 9814280
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9814221 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatg 9814280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 48160594 - 48160653
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48160594 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatg 48160653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 8419592 - 8419654
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  8419592 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 8419654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 11330061 - 11329999
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  11330061 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 11329999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 27213858 - 27213920
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  27213858 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 27213920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 27248361 - 27248299
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  27248361 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 27248299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 38544262 - 38544200
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  38544262 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtatatgcct 38544200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 39554251 - 39554189
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  39554251 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 39554189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 40212957 - 40212895
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  40212957 tgtgtttgtttcaagttataattgttgattcgcgggaataaaatgataggaatgtatatgcct 40212895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 43949313 - 43949251
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  43949313 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 43949251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 45045694 - 45045632
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45045694 tgtgtttgttttaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 45045632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 25098137 - 25098076
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcc 204  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  25098137 tgtgtttgtttcaagttataatttttgattttcgggaataaaatgataggaatgtatatgcc 25098076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 25924642 - 25924702
Alignment:
Q  145 tgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  25924642 tgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 25924702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 27419227 - 27419289
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||    
T  27419227 tgtgtttgtttcaagttataattgctgattcccgggaataaaatgatagaaatgtatatgcct 27419289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 35488192 - 35488254
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  35488192 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtatatgcct 35488254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 38396370 - 38396428
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38396370 gtgtttgttccaagttataattgttgattcccgggaataaaatgataggaatgtatatg 38396428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 45265051 - 45265113
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  45265051 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgattggaatgtatatgcct 45265113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 45449009 - 45448955
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgta 198  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45449009 gtgtttgtttcaagttataatttttgattctcgggaataaaatgataggaatgta 45448955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 44566113 - 44566054
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  44566113 tgtgtttgtttcaagttataattgttgatttccggaaataaaatgataggaatgtatatg 44566054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 41632367 - 41632429
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||    
T  41632367 tgtgtttgtttcaagttataattgttgattcctgagaataaaatgatagaaatgtatatgcct 41632429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 45723275 - 45723213
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| || |||||||||| |||||||||||||||||| |||||||||    
T  45723275 tgtgtttgtttcaagttatatttgttgattcccgagaataaaatgataggaatatatatgcct 45723213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 28904189 - 28904248
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  28904189 tgtgtttgttttaagttataattgttgattcccgagaataaaatgatagaaatgtatatg 28904248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 34930468 - 34930531
Alignment:
Q  143 tgtgtttgtttcaa-gttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  34930468 tgtgtttgtttcaaagttataattgttgattcctgggaataaaatgatagaaatgtatatgcct 34930531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 16825357 - 16825419
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| || |||||  ||||||||||||||| |||||||||||||    
T  16825357 tgtgtttgtttcaagttataattgttaattcctaggaataaaatgatagaaatgtatatgcct 16825419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 44820322 - 44820266
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtat 199  Q
    ||||||||||||||||||||||| ||||||  | ||||||||||||||| |||||||    
T  44820322 tgtgtttgtttcaagttataattgttgattttcaggaataaaatgatagaaatgtat 44820266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 41684025 - 41684084
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||||| || |||||||| | |||||| ||||||| ||| ||||||    
T  41684025 tgtgtttgtttcaagttatatttgttgattcctgagaataatatgatagaaatatatatg 41684084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 6656220 - 6656285
Alignment:
Q  136 ataaatatgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    |||||| |||||||||||||||||||| || ||||||   || |||||||||||| |||| |||||    
T  6656220 ataaatgtgtgtttgtttcaagttatatttgttgatttttggaaataaaatgatatgaatatatat 6656285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 25045621 - 25045680
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgc 203  Q
    |||||||||||||||||||| || |||||| | ||| |||||| ||||||||| |||||||    
T  25045621 tgtgtttgtttcaagttatatttgttgatt-ctggggataaaaagataggaatatatatgc 25045680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 7053573 - 7053635
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7053573 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 7053635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 14171081 - 14171019
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14171081 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatctatatgcct 14171019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 1317086 - 1317024
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  1317086 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 1317024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 2657768 - 2657710
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2657768 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatat 2657710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 8029401 - 8029339
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  8029401 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 8029339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 18897989 - 18897927
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||    
T  18897989 tgtgtttgtttcaagttataattgttgattcccggaaataaagtgatagaaatgtatatgcct 18897927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 16968989 - 16968934
Alignment:
Q  147 tttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||| ||||||    
T  16968989 tttgtttcaagttataattgttgattcctgagaataaaatgataggaatctatatg 16968934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 7344086 - 7344148
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||| ||||||| |||||||| |  ||| ||| ||||||||||||||||||||||||||||    
T  7344086 tgtgttcgtttcaaattataattgtaaatttccgagaataaaatgataggaatgtatatgcct 7344148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 10246225 - 10246258
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccg 176  Q
    ||||||||||||||||||||||| ||||||||||    
T  10246225 tgtgtttgtttcaagttataattgttgattcccg 10246258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 10849786 - 10849834
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgatag 191  Q
    |||||||||||||||||||  || | |||||| ||||||||||||||||    
T  10849786 tgtgtttgtttcaagttatttttatagattcctgggaataaaatgatag 10849834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 4765563 - 4765625
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4765563 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 4765625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 12970533 - 12970595
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12970533 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 12970595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 19065508 - 19065570
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19065508 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 19065570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 18412277 - 18412215
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  18412277 tgtgtttgtttcaagttataattattgattcctgggaataaaatgataggaatgtatatgcct 18412215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 22935915 - 22935977
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  22935915 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 22935977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 28602623 - 28602561
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  28602623 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 28602561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 555709 - 555768
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  555709 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatg 555768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 11855657 - 11855720
Alignment:
Q  142 atgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  11855657 atgtgtttgtttcaagttataattgttgattcctgagaataaaatgataggaatgtatatgcct 11855720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 14206824 - 14206886
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  14206824 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgatagaaatgtatatgcct 14206886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 6091782 - 6091721
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||    
T  6091782 gtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtatatgcct 6091721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 29543018 - 29543077
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  29543018 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgattggaatgtatatg 29543077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 27481425 - 27481363
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||||    
T  27481425 tgtgtttgtttcaagttataatttttgatttttggaaataaaatgataggaatgtatatgcct 27481363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 32536005 - 32535946
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  32536005 tgtgtttgttttaagttataattgttgattcccaggaataaaatgatagaaatgtatatg 32535946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 36703942 - 36703883
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  36703942 tgtgtttgtttcaagttataattgttgattatcgggaataaaatgatagaaatgtatatg 36703883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 8406959 - 8406900
Alignment:
Q  146 gtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| ||||||  || ||||||||||||||||||||| ||||||    
T  8406959 gtttgtttcaagttataattgttgattttcgagaataaaatgataggaatgtacatgcct 8406900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 8646412 - 8646453
Alignment:
Q  161 taatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  8646412 taattgttgattcccgggaataaaatgataggaatgtatatg 8646453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 6930712 - 6930654
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||| |||||||||||| || |||||||| | |||||||||||||| ||| |||||    
T  6930712 tgtgtttatttcaagttatatttgttgattcctgagaataaaatgatagaaatatatat 6930654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 20962658 - 20962606
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaat 195  Q
    |||||||||||||||||||| |  | |||||  ||||||||||||||||||||    
T  20962658 tgtgtttgtttcaagttatattcgtagattcttgggaataaaatgataggaat 20962606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 26637046 - 26637094
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgatag 191  Q
    |||||||||||||||||||| || ||||||   ||||||||||||||||    
T  26637046 tgtgtttgtttcaagttatatttgttgattaatgggaataaaatgatag 26637094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 42012182 - 42012230
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgatag 191  Q
    ||||||||||| ||| |||| || ||||||| |||||||||||||||||    
T  42012182 tgtgtttgtttgaagctatatttgttgattctcgggaataaaatgatag 42012230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 24574643 - 24574581
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24574643 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 24574581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 26849090 - 26849028
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26849090 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 26849028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 40908333 - 40908271
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40908333 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 40908271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 6231504 - 6231566
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  6231504 tgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatatgcct 6231566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 8476311 - 8476373
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  8476311 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 8476373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 9320451 - 9320509
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9320451 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatat 9320509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 11239123 - 11239185
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  11239123 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 11239185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 28124439 - 28124501
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  28124439 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgataggaatgtatatgcct 28124501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 44952376 - 44952314
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  44952376 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 44952314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 33217917 - 33217978
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  33217917 gtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatgcct 33217978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 20297861 - 20297799
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  20297861 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtatatgcct 20297799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 47114860 - 47114922
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||    
T  47114860 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgattggaatgtatatgcct 47114922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 48339759 - 48339822
Alignment:
Q  142 atgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||    
T  48339759 atgtgtttgtttcaagttataattgttgatttccgggaataaaatgatataaatgtatatgcct 48339822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 1099266 - 1099208
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1099266 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatagaaatgtatat 1099208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 20414468 - 20414530
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||    
T  20414468 tgtgtttgtttcaagttataattgttgatttctgggaataaaatgattggaatgtatatgcct 20414530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 43715311 - 43715370
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||||    
T  43715311 tgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtatatg 43715370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 31435926 - 31435988
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| || |||||||| | |||||||||||||| |||||||||||||    
T  31435926 tgtgtttgtttcaagttatatttgttgattcctgagaataaaatgatagaaatgtatatgcct 31435988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 43132160 - 43132222
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| || ||||||| || ||||||||| |||||||| |||||||||    
T  43132160 tgtgtttgtttcaagttatatttgttgattctcgagaataaaataataggaatatatatgcct 43132222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 31611004 - 31611047
Alignment:
Q  159 tataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  31611004 tataattgttgattcccgggaataaaatgattggaatgtatatg 31611047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 29512747 - 29512704
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaat 186  Q
    |||||||||||||||||||||||||| ||| | |||||||||||    
T  29512747 tgtgtttgtttcaagttataatttttaatttctgggaataaaat 29512704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 53165733 - 53165788
Alignment:
Q  148 ttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgc 203  Q
    ||||||||||||||| || |||||||||   ||||||||||||||||| |||||||    
T  53165733 ttgtttcaagttatatttgttgattcccataaataaaatgataggaatatatatgc 53165788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 9320407 - 9320441
Alignment:
Q  167 ttgattcccgggaataaaatgataggaatgtatat 201  Q
    ||||||| |||||||||||||||||||||||||||    
T  9320407 ttgattctcgggaataaaatgataggaatgtatat 9320441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 45826844 - 45826796
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgatag 191  Q
    |||||||||||||||||||  || | |||||| ||||||||||||||||    
T  45826844 tgtgtttgtttcaagttatcgttgtagattccagggaataaaatgatag 45826796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 346348 - 346410
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  346348 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 346410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 39995134 - 39995196
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39995134 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcct 39995196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 21737403 - 21737462
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21737403 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatg 21737462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 6171859 - 6171797
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  6171859 tgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatatgcct 6171797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 9733849 - 9733911
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  9733849 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 9733911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 11071673 - 11071611
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  11071673 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatgcct 11071611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 41729133 - 41729195
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  41729133 tgtgtttgtttcaagttataattttttattcccgggaataaaatgataggaatggatatgcct 41729195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 42674664 - 42674726
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  42674664 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcct 42674726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 5770115 - 5770175
Alignment:
Q  145 tgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  5770115 tgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtatatgcct 5770175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 2050943 - 2050876
Alignment:
Q  134 ttataaatatgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatat 201  Q
    |||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  2050943 ttataagtgtgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatat 2050876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 34356703 - 34356762
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  34356703 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatg 34356762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 37192590 - 37192531
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  37192590 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatg 37192531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 37534020 - 37533961
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  37534020 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatg 37533961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 14777501 - 14777563
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||    
T  14777501 tgtgtttgtttcaatttataattgttgattcccgggaataaaatgattggaatgtatatgcct 14777563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 28311701 - 28311762
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  28311701 gtgtttgtttcaagttatatttgttgattcccgggaataaaatgataggaatatatatgcct 28311762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 638660 - 638602
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  638660 gtgtttgtttcaagttataattgttgatttccggaaataaaatgataggaatgtatatg 638602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 2521743 - 2521681
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||    
T  2521743 tgtgtttgtttcaagttataattgttgattcccgaaaataaaatgattggaatgtatatgcct 2521681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 4559627 - 4559565
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||||    
T  4559627 tgtgtttgtttcaagttataattgttgattcccaagaataaaatgattggaatgtatatgcct 4559565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 20426486 - 20426548
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||    
T  20426486 tgtgtttgtttcaaattatatttgttgattcccgggaataaaatgataggaatttatatgcct 20426548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 41750597 - 41750535
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||| |||||||||||||    
T  41750597 tgtgtttgtttcaagttataattgttgattcctaggaataaaatgatagaaatgtatatgcct 41750535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 26310335 - 26310278
Alignment:
Q  145 tgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  26310335 tgtttgtttaaagttataattgttgattcccgggaataaaatgatagaaatgtatatg 26310278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 37233496 - 37233435
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||||||    
T  37233496 gtgtttgtttcaagttatatttgttgattcccgggaataaaatgataggaacatatatgcct 37233435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 40950862 - 40950922
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgc 203  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||    
T  40950862 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatatatatgc 40950922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 17966051 - 17965992
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  17966051 tgtgtttgtttcaagttataattgttgattcccgataataaaatgattggaatgtatatg 17965992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 45409318 - 45409256
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| || |||||||||  | ||||||||||||||||||||||||||    
T  45409318 tgtgtttgtttcaagttatatttgttgattcccaagtataaaatgataggaatgtatatgcct 45409256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 13761014 - 13760961
Alignment:
Q  142 atgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaat 195  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  13761014 atgtgtttgtttcaagttataattattgattttcgggaataaaatgataggaat 13760961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 27357966 - 27358025
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatg 202  Q
    |||||||||||||||||||| || ||||||||| || ||||||||||||| |||||||||    
T  27357966 tgtgtttgtttcaagttatatttgttgattcccaggtataaaatgatagggatgtatatg 27358025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 14832877 - 14832816
Alignment:
Q  144 gtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||| || ||||||||  ||||||||||||||| ||| |||||||||    
T  14832877 gtgtttgtttcaagttatatttgttgattcctaggaataaaatgatagaaatatatatgcct 14832816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 6571751 - 6571693
Alignment:
Q  147 tttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||| |||||||| || |||||| |||| ||||||||||||||||| |||||||||    
T  6571751 tttgtttaaagttatatttgttgatttccggaaataaaatgataggaatatatatgcct 6571693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 40570088 - 40570045
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaat 186  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  40570088 tgtgtttgtttcaagttataattgtagattcctgggaataaaat 40570045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 1988379 - 1988317
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||| |||||||| || |||||| | |||||||||||||||| ||| || ||||||    
T  1988379 tgtgtttgtttgaagttatatttgttgatttctgggaataaaatgatagaaatatacatgcct 1988317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 18713660 - 18713722
Alignment:
Q  143 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    |||||||||||||||||||| || |||||||  || ||||||||||||  ||| |||||||||    
T  18713660 tgtgtttgtttcaagttatatttgttgattcatggtaataaaatgatataaatatatatgcct 18713722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 28957 - 29017
Alignment:
Q  145 tgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcct 205  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  28957 tgtttgtttcaagttataattgttgattttcgggaataaaatgataggaatgtatatgcct 29017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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