View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_low_3 (Length: 541)
Name: NF14248_low_3
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 20 - 495
Target Start/End: Complemental strand, 24834025 - 24833549
Alignment:
| Q |
20 |
ctcccatatttagcaataatttgcctaactctacagttttgacctcagacggaatgttagcaaggatgaaggattgtctttgcaaataagaaaagtaaat |
119 |
Q |
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| T |
24834025 |
ctcccatatttagcaataatttgcctaactctacagttttgacctcagacggaatgttagcaaggatgaaggattgtctttgcaaataagaaaaatatat |
24833926 |
T |
|
| Q |
120 |
atgaaattggggatttggtaaatagcttgaaatcgaaatgcttccctgaaacatattaaggattcatag-aagcaacatagattgaaattaggctgacac |
218 |
Q |
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| T |
24833925 |
atgaaattggggatttggtaaatagcttgaaatcgaaatgcttccctgaaacatattgaggattcatagcaagcaacatagattgaaattaggctgacac |
24833826 |
T |
|
| Q |
219 |
aaagttgtctttgcaaataagaaaaatattgggttgcacatattctataccagaatgttttattcgatttttatcagggggctatgtagttgtccaatat |
318 |
Q |
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| T |
24833825 |
aaagttgtctttgcaaataagaaaaatattgggttgcacatattctataccagaatgttttattcgatttttatcagggggctatgtagttgtccaatat |
24833726 |
T |
|
| Q |
319 |
aatattgacctccacttcaattttctctataactctgatctgaatgatttatattattagaatttgtttgctagttaacctttttcatttgtccattaac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24833725 |
aatattgacctccacttcaattttctctataactctgatctgaatgatttatattattagaatttgtttgctagttaacctttttcatttttccattaac |
24833626 |
T |
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| Q |
419 |
ttacaggtgtcactgccatccttttcccttgggttgccagcgtacgaggtccttgctctgtctgaatcatcttctaa |
495 |
Q |
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| T |
24833625 |
ttacaggggtcactgccatccttttcccttgggttgccagcgtacgaggtccttgctctgtctgaatcatcttctaa |
24833549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 367 - 522
Target Start/End: Complemental strand, 18187311 - 18187156
Alignment:
| Q |
367 |
ttatattattagaatttgtttgctagttaacctttttcatttgtccattaacttacaggtgtcactgccatccttttcccttgggttgccagcgtacgag |
466 |
Q |
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|||| ||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||| | |
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| T |
18187311 |
ttatgttattagaattcatttgttagttaacccttttcatccgtccattaacttacaggtgtcactgccatccttttcgcttgggttgccggcatactat |
18187212 |
T |
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| Q |
467 |
gtccttgctctgtctgaatcatcttctaacttgtctcgctctgatggcatcaggtc |
522 |
Q |
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| T |
18187211 |
gtccttgctttgtctgaatcatcttccaacttgtctcgctatgatggtattaggtc |
18187156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 18187375 - 18187336
Alignment:
| Q |
327 |
cctccacttcaattttctctataactctgatctgaatgat |
366 |
Q |
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| T |
18187375 |
cctccacttcatttttctctatatctctgatctgaatgat |
18187336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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