View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_low_5 (Length: 434)
Name: NF14248_low_5
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 41639243 - 41638827
Alignment:
| Q |
1 |
aactttcatttaacacaaacacattgtgatacagtaatcctgtagcagaaaggttatgcttttgaacaagaaaattagtaaaacatgacatgacaactct |
100 |
Q |
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| T |
41639243 |
aactttcatttaacagaaacacattgtgatacagtaatcctgtagaagaaaggttatgcttttgaacaagaaaattagtaaaacatgacatgacaactct |
41639144 |
T |
|
| Q |
101 |
aggctgctagggaagaaaaaatcgaaatccttttaatattcttcgttgtatgtnnnnnnncaatgtgtactcccaaaaaattcggtgaactaggcttgag |
200 |
Q |
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| T |
41639143 |
aggctgctagggaagaaaaaatcgaaatccttttaatattcttcattgtatgtaaaaaaacaatgtgtactcccaaaaaattcggtgaactaggcttgag |
41639044 |
T |
|
| Q |
201 |
aagtatgcgtcaagttaacgttgcgtatatgatgagagctaattggcgtttttgtacgcaactgaagcagatgtggacatcagttattcttaagaaatac |
300 |
Q |
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| T |
41639043 |
aagtatgcgtcaagttaacgttgcgtatatgatgagagctaattggcgtttttgtacgcaactgaagcagatgtggacatcagttattcttaagaaatac |
41638944 |
T |
|
| Q |
301 |
aaatgtggttctagtttgcttccgatggtaaatgttgataaaccggggagcaatttttggcgcggcttgtgtgctaactggactaatttccaaaatcaga |
400 |
Q |
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| T |
41638943 |
aaatgtggttctagtttgcttccgatggtaaatgttgataaaccggggagcaatttttggcgcggcttgtgtgctaactggactaatttccaaaatcaga |
41638844 |
T |
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| Q |
401 |
tcatatagagattaggt |
417 |
Q |
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| T |
41638843 |
tcatatagagattaggt |
41638827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 164 - 417
Target Start/End: Original strand, 2718799 - 2719053
Alignment:
| Q |
164 |
tgtgtactcccaaaaaattcggtgaactaggcttgagaagtatgcgtcaagttaacgttgcgtatatgatgagagctaattggcgtttttgtacgcaact |
263 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| | || |
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| T |
2718799 |
tgtgtactccccaaaaattcggtggtttaggcttgagaagtatgtgtcaagttaacactgtgtatatgatgagagctaattggcgtttttgtactcgacc |
2718898 |
T |
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| Q |
264 |
gaagcagatgtggacatcagttattcttaagaaatacaaatgtggttctagtttgcttccgatggtaaatg-ttgataaaccggggagcaatttttggcg |
362 |
Q |
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||| ||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| | |
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| T |
2718899 |
aaagaagatgtggacatctgttattcgtaagaaatacaaatgtggttcttttttgcttccgatggtaaatgtttgataaaatggggagcaatttttggtg |
2718998 |
T |
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| Q |
363 |
cggcttgtgtgctaactggactaatttccaaaatcagatcatatagagattaggt |
417 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
2718999 |
tggcttgtgtgctacctggactaatttccaaaatcagattatatggagattaggt |
2719053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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