View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_low_6 (Length: 413)
Name: NF14248_low_6
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Original strand, 45124754 - 45125161
Alignment:
| Q |
7 |
ctaagaagtctcaaaccaattatgacatattcaacctcaaattctttgtaaagcaagaaagagaattacaccaaacagaaaa-aaccaaaccagagtttc |
105 |
Q |
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| T |
45124754 |
ctaagaagtctcaaaccaattatgacatattcaacctcaaattctttgtaaagcaagaaagagaattacaccaaacagaaaaaaaccaaaccagagtttc |
45124853 |
T |
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| Q |
106 |
ctccaattccctacttattataaatcaagacaagacaaatatttgattaatttaacctaccaccttaagccaatttggcacaataaaggctctaactcgt |
205 |
Q |
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| T |
45124854 |
ctccaattccttacttattataaatcaagacaagacaaatatttgattaatttaacctaccaccttaagccaatttggcacaataaaggctctaactcat |
45124953 |
T |
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| Q |
206 |
tatgaaatttgtcgttcgttgtctcaaatgcagctacacacatgttacgttgtcctgagaagatttcgtgtataattattaccatccatgttacaaactt |
305 |
Q |
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| T |
45124954 |
tatgaaatttgtcgttcgttgtctcaaatgcagctacacacatgttacgttgtcctgagaagatttcgtgtataattattaccatacatgttacaaactt |
45125053 |
T |
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| Q |
306 |
attggtattattttggcagaacaaaactcttattggtataattatggatgtatataannnnnnnngaaggggatgtagataatattttgttcaccaacat |
405 |
Q |
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| T |
45125054 |
attggtattattttggcagaacaaaactcttattggtatacttatggatgtatataattttttttaaaggggatgtagataatattttgtacaccaatat |
45125153 |
T |
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| Q |
406 |
tcattcaa |
413 |
Q |
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| T |
45125154 |
tcattcaa |
45125161 |
T |
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