View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14249_high_12 (Length: 236)
Name: NF14249_high_12
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14249_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11019209 - 11018994
Alignment:
| Q |
1 |
atctatttagcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaa |
100 |
Q |
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| T |
11019209 |
atctatttagcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaa |
11019110 |
T |
|
| Q |
101 |
tccacccacggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
11019109 |
tccacccacggagttatgactcaatatcgcaacttgtggggcccaatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaat |
11019010 |
T |
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| Q |
201 |
aactcatccaaactca |
216 |
Q |
| |
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||||| |||||||||| |
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| T |
11019009 |
aactcgtccaaactca |
11018994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 11002818 - 11002609
Alignment:
| Q |
11 |
cctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacg |
110 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| || |
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| T |
11002818 |
cctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttccaacactgagttccatccacagtgagtcacgaatccaccaact |
11002719 |
T |
|
| Q |
111 |
gagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatcca |
210 |
Q |
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| T |
11002718 |
gattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatcca |
11002619 |
T |
|
| Q |
211 |
aactcagttc |
220 |
Q |
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|||| ||||| |
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| T |
11002618 |
aactaagttc |
11002609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 11079931 - 11079750
Alignment:
| Q |
39 |
atcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtg |
138 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| |||| || | ||| | | |||||| |
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| T |
11079931 |
atcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtg |
11079832 |
T |
|
| Q |
139 |
gggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatccaaactcagttc |
220 |
Q |
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| T |
11079831 |
gtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttc |
11079750 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11050325 - 11050227
Alignment:
| Q |
1 |
atctatttagcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaa |
99 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11050325 |
atctatttagcctttgttctgcaaacaaaggccatgcaatcattggcaccccttcataaatagcttccaacacggagttccatccacaatgaatcacaa |
11050227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 10968640 - 10968435
Alignment:
| Q |
9 |
agcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccaccca |
108 |
Q |
| |
|
|||||||||||||| | || ||||| || | ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | |
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| T |
10968640 |
agcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaa |
10968541 |
T |
|
| Q |
109 |
cggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatc |
208 |
Q |
| |
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|||| ||| | ||||| ||| ||||||| ||||| ||||| | ||||||||||| | ||||||||||| |||||||||||| || | ||||| || |
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| T |
10968540 |
tcgagtcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattcccttttgctttgtcctctccaaaaacccttcaggaagcaactcgtc |
10968441 |
T |
|
| Q |
209 |
caaact |
214 |
Q |
| |
|
|||||| |
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|
| T |
10968440 |
caaact |
10968435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 10982590 - 10982385
Alignment:
| Q |
9 |
agcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccaccca |
108 |
Q |
| |
|
|||||||||||||| |||| |||||||| | ||| ||||| |||||||| | |||||||||||| ||||||||||||||||| ||||| |||||||| | |
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| T |
10982590 |
agcctttgttctgcatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccga |
10982491 |
T |
|
| Q |
109 |
cggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatc |
208 |
Q |
| |
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|||| ||| | ||||| ||| ||||||| ||||| ||||| || ||||||||| | || |||||||||| |||||||||||| || | ||||| || |
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| T |
10982490 |
tcgagtcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattcccctttcttttgtcctctccaaaaacccttcagggagcaactcgtc |
10982391 |
T |
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| Q |
209 |
caaact |
214 |
Q |
| |
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|||||| |
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|
| T |
10982390 |
caaact |
10982385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 24462263 - 24462344
Alignment:
| Q |
65 |
ttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggcccag |
146 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||| |||| || | |||| ||||||||| ||||||||||||||| |
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| T |
24462263 |
ttccaacactgagttccatccacaatgagtcaaaaatgcaccaacagctctatgtctcaatatcatcacttgtggggcccag |
24462344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
| Q |
64 |
cttccaacacggagttccatccacaatgagtca |
96 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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|
| T |
23628117 |
cttccaacaccgagttccatccacaatgagtca |
23628149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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