View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14249_high_15 (Length: 232)
Name: NF14249_high_15
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14249_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3765779 - 3765560
Alignment:
| Q |
1 |
caaatcgtaagtgtacaaacctcaaacttaaaagatatatggtgtaatttaaccattt-ctagttaatccatagtttccaactagctaatttcatagaat |
99 |
Q |
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| T |
3765779 |
caaatcgtaagtgtacaaacctcaaacttaaaagacatatgctgtaatttaaccattttctagttaatccatagtttccaactagctaatttcatagaat |
3765680 |
T |
|
| Q |
100 |
ttgacatcaaaattactattgtttcaggctgaagaatgaaactcatgtgtacactgaagataatgctagatttattcctggtcatggcatagcatgtcgt |
199 |
Q |
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| T |
3765679 |
ttgacatcaaaattactattgtttcaggctgaagaatgaaactcatgtgtacactgaagataatgctagatttattcctggtcatggcatagcatgtcgt |
3765580 |
T |
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| Q |
200 |
ccctaaaggaaaggaaagga |
219 |
Q |
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|||||||||||||||||||| |
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| T |
3765579 |
ccctaaaggaaaggaaagga |
3765560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 48388124 - 48388062
Alignment:
| Q |
118 |
ttgtttcaggctgaagaatgaaactcatgtgtacactgaagataatgctagatttattcctgg |
180 |
Q |
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| T |
48388124 |
ttgtttcaggcttcagaatgaaactcatgtgtacactgaagaaaatgctagattcattcctgg |
48388062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 9982691 - 9982651
Alignment:
| Q |
14 |
tacaaacctcaaacttaaaagatatatggtgtaatttaacc |
54 |
Q |
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| T |
9982691 |
tacaaacctcaaacttaaaagacctatgatgtaatttaacc |
9982651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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