View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14249_low_1 (Length: 638)
Name: NF14249_low_1
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14249_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 16 - 616
Target Start/End: Original strand, 28437974 - 28438574
Alignment:
| Q |
16 |
tgttgcacccaaatcatccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgattttggtttagcaaaactat |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28437974 |
tgttgcacccaaatcatccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgatttcggtttagcaaaactat |
28438073 |
T |
|
| Q |
116 |
tactgattaatcaaagtcacactaaaaccggaattagaggaaccaaagggtatgttgcaccagattggtttaggagtgcaccaatcagcgctaaggttga |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438074 |
tactgattaatcaaagtcacactaaaaccggaattagaggaaccaaagggtatgttgcaccagattggtttaggagtgcaccaatcagcgctaaggttga |
28438173 |
T |
|
| Q |
216 |
tgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaagaatgtagagcattaaaatgcaagtgaagaaaagaggattttaactgattgg |
315 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28438174 |
tgtttacagttttggtgtcttgtttcttgaaataatttgttgtagaaaaaatgtagagcatgaaaatgcaagtgaagaaaagaggattttaactgattgg |
28438273 |
T |
|
| Q |
316 |
gcatatgattgctacaaggctaataacttggaccttcttctagaaaatgaatgtgaggttgtcaatgaaattagtagagtggaaaaatttgtcatgattg |
415 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28438274 |
gcatatgattgctacaaggctaataatttggaccttcttctagaaaatgaatgtgaggttgtcaatgaaatgagtagagtggaaaaatttgtcatgattg |
28438373 |
T |
|
| Q |
416 |
ctatttggtgcactcaagaagatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagaaattgttgaagttgcaattcctccaagtcc |
515 |
Q |
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| T |
28438374 |
ctatttggtgtactcaagaagatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagagattgttgaagttgcaattcctccaagtcc |
28438473 |
T |
|
| Q |
516 |
ctacctctacggttcttttagttgaaattagaattagttcccttcgggtgtaattttgatgcatcttgtaatttgttttactaagactgctatttgtcta |
615 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||| |
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| T |
28438474 |
ctacctctatggttcttttagttgaaattaaaattagttcccttcggatgtaattttgatgcttcttgtaatttgttttactaagtctactatttgtcta |
28438573 |
T |
|
| Q |
616 |
t |
616 |
Q |
| |
|
| |
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| T |
28438574 |
t |
28438574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 554
Target Start/End: Original strand, 28488029 - 28488568
Alignment:
| Q |
15 |
atgttgcacccaaatcatccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgattttggtttagcaaaacta |
114 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||| | |||||| |||||||| ||| |||| ||| |
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| T |
28488029 |
atgttgcacccaaatcatccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggattatcaaagcta |
28488128 |
T |
|
| Q |
115 |
ttactgattaatcaaagtcacactaaaaccggaattagaggaaccaaagggtatgttgcaccagattggtttaggagtgcaccaatcagcgctaaggttg |
214 |
Q |
| |
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|| ||||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
28488129 |
ttgttgattaatcaaagccacactgaaactggaattagaggaacaaaagggtatgttgcaccagattggtttaggagtgcaccaatcacttcaaaggttg |
28488228 |
T |
|
| Q |
215 |
atgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaagaatgtagagcattaaaatgcaagtgaagaaaagaggattttaactgattg |
314 |
Q |
| |
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|| ||| ||||||||||| ||||| | ||||| ||||||||||| || ||||||||| || | | ||||||||| |||||||||||||||| |
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|
| T |
28488229 |
atacttatagttttggtgtattgttgttagaaatcatttgttgtaggaaaaatgtagagagagaattttttactgaagaaaaagggattttaactgattg |
28488328 |
T |
|
| Q |
315 |
ggcatatgattgctacaaggctaata-acttggaccttcttctagaaaatgaatgtgaggttgtcaatgaaattagtagagtggaaaaatttgtcatgat |
413 |
Q |
| |
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||| ||||||||||| ||| |||| | |||| ||| ||||||||||||||| ||||| || |||||| || | | ||||||| ||||| ||||| |
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|
| T |
28488329 |
ggcttatgattgctataagactaaaagactt-gacggtcttctagaaaatgataatgaggctggcaatgacatgatgtgcttggaaaagtttgtgatgat |
28488427 |
T |
|
| Q |
414 |
tgctatttggtgcactcaagaagatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagaaattgttgaagttgcaattcctccaagt |
513 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||| | ||| |||||| |||||||||||||||| |||| |||||| |
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|
| T |
28488428 |
tgctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgttttactgatgttagaaggaattgttgaagttgcagttcccccaagt |
28488527 |
T |
|
| Q |
514 |
ccctacctctacggttcttttagttgaaattagaattagtt |
554 |
Q |
| |
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||||| || || |||||| | ||||| |||||||||||||| |
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|
| T |
28488528 |
ccctatctgtatggttctgtaagttgtaattagaattagtt |
28488568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 518
Target Start/End: Original strand, 28466268 - 28466771
Alignment:
| Q |
15 |
atgttgcacccaaatcatccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgattttggtttagcaaaacta |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||| | |||||| |||||||| ||| |||| ||| |
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|
| T |
28466268 |
atgttgcacccaaatcatccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggattatcaaagcta |
28466367 |
T |
|
| Q |
115 |
ttactgattaatcaaagtcacactaaaaccggaattagaggaaccaaagggtatgttgcaccagattggtttaggagtgcaccaatcagcgctaaggttg |
214 |
Q |
| |
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|| ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
28466368 |
ttgttgattaatcaaagccacactgaaactggaattagaggaaccaaagggtatgttgcaccagattggtttaggagtgcaccaatcactgcaaaggttg |
28466467 |
T |
|
| Q |
215 |
atgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaagaatgtagagcattaaaatgcaagtgaagaaaagaggattttaactgattg |
314 |
Q |
| |
|
|| ||| ||||||||||| ||||| | || || ||||||||||| || ||||||||| | ||| | | ||||||| | |||||||||||||||| |
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|
| T |
28466468 |
atacttatagttttggtgtattgttgttagagatcatttgttgtaggaaaaatgtagagaaagaaattttcactgaagaacaagggattttaactgattg |
28466567 |
T |
|
| Q |
315 |
ggcatatgattgctacaaggctaata-acttggaccttcttctagaaaatgaatgtgaggttgtcaatgaaattagtagagtggaaaaatttgtcatgat |
413 |
Q |
| |
|
||| ||||||||||| ||| |||| | |||| ||| ||||||||||||||| ||||| || |||||| || | | ||||||| ||||| ||||| |
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|
| T |
28466568 |
ggcttatgattgctataagactaaaagactt-gacggtcttctagaaaatgataatgaggctggcaatgacatgatgtgcttggaaaagtttgtgatgat |
28466666 |
T |
|
| Q |
414 |
tgctatttggtgcactcaagaagatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagaaattgttgaagttgcaattcctccaagt |
513 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||| | ||| |||||| |||||||||||||||| |||| |||||| |
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|
| T |
28466667 |
tgctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgttttactgatgttagaaggaattgttgaagttgcagttcccccaagt |
28466766 |
T |
|
| Q |
514 |
cccta |
518 |
Q |
| |
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||||| |
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|
| T |
28466767 |
cccta |
28466771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 16 - 531
Target Start/End: Original strand, 28445423 - 28445938
Alignment:
| Q |
16 |
tgttgcacccaaatcatccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgattttggtttagcaaaactat |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| | |||||||| | ||||| |||||||| |||||||| ||| |
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|
| T |
28445423 |
tgttgcacccaaatcatccattgcgatataaagccacaaaatatacttctagatgatcaatacaatgcaagaatttcagattttggattagcaaagttat |
28445522 |
T |
|
| Q |
116 |
tactgattaatcaaagtcacactaaaaccggaattagaggaaccaaagggtatgttgcaccagattggtttaggagtgcaccaatcagcgctaaggttga |
215 |
Q |
| |
|
| ||||||||||||| || || |||| ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
28445523 |
tgttgattaatcaaagccataccgaaactggaataagaggaactaagggatatgttgcaccagattggtttaggagtgcaccaatcactgcaaaggttga |
28445622 |
T |
|
| Q |
216 |
tgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaagaatgtagagcattaaaatgcaagtgaagaaaagaggattttaactgattgg |
315 |
Q |
| |
|
| ||| ||||||||||| || || | || ||||| |||||||| || || |||||| | || | | |||||||| ||||||||||||||||| |
|
|
| T |
28445623 |
tacttatagttttggtgtattattgttagagataatatgttgtaggaaaaacgtagagaaagaattttttaccgaagaaaaagggattttaactgattgg |
28445722 |
T |
|
| Q |
316 |
gcatatgattgctacaaggctaata-acttggaccttcttctagaaaatgaatgtgaggttgtcaatgaaattagtagagtggaaaaatttgtcatgatt |
414 |
Q |
| |
|
|| ||||||||||||||| |||| | |||| ||| ||||||| ||||| || ||||| | |||||| || | | ||||||| ||||| |||||| |
|
|
| T |
28445723 |
gcttatgattgctacaagactaaaagactt-gacattcttctcgaaaaagataatgaggctagcaatgacatgatgtgcttggaaaagtttgtgatgatt |
28445821 |
T |
|
| Q |
415 |
gctatttggtgcactcaagaagatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagaaattgttgaagttgcaattcctccaagtc |
514 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| | ||| |||||| |||||||||||||||| ||| ||||||| |
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| T |
28445822 |
gctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaaggttttactgatgttagaaggaattgttgaagttgcagctcccccaagtc |
28445921 |
T |
|
| Q |
515 |
cctacctctacggttct |
531 |
Q |
| |
|
|||| || || |||||| |
|
|
| T |
28445922 |
cctatctatatggttct |
28445938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 3056654 - 3056730
Alignment:
| Q |
31 |
atccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgattttggtttagc |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||| ||| |||||| | ||||| |||||||| ||||| |
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|
| T |
3056654 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagc |
3056730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 3070261 - 3070114
Alignment:
| Q |
28 |
atcatccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgattttggtttagcaaaactattactgattaatc |
127 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| || |||||| | | |||||| | ||||| |||||||| |||||||| || || || |||| |
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|
| T |
3070261 |
atcatccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatc |
3070162 |
T |
|
| Q |
128 |
aaagtcacactaaaaccggaattagaggaaccaaagggtatgttgcac |
175 |
Q |
| |
|
|||| | || || || || || |||||||| |||||||||||||||| |
|
|
| T |
3070161 |
aaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
3070114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 3035783 - 3035865
Alignment:
| Q |
28 |
atcatccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgattttggtttagcaaa |
110 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| || |||||| | | |||||| | ||||| |||||||| |||||||| |
|
|
| T |
3035783 |
atcattcattgtgacataaagcctcaaaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaa |
3035865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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