View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14249_low_14 (Length: 245)
Name: NF14249_low_14
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14249_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8921950 - 8921710
Alignment:
| Q |
1 |
cttgtgcatgcacctttcaaacacataggaatcacagcagctgcatatatcacatacatcctgttagaagacatctgactagacataatcagacccttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8921950 |
cttgtgcatgcacctttcaaacacataggaatcacaacagctgcatatatcacatacatcctgttagaagacatctgactagacataatcagacccttat |
8921851 |
T |
|
| Q |
101 |
tttcatgatagaatttgcaactatcttcagaaaatacagtagtaagattcttctgctgcaattgacctatacttaacaaattgttcttcaaacgtggaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || || |
|
|
| T |
8921850 |
tttcatgatagaatttgcaactatctttagaaaataatgtagtaagattcttctgctgcaattgacctatactcaacaaattgttcctcaaacctgaaaa |
8921751 |
T |
|
| Q |
201 |
ataatacacatcggtgatcacctgtatcattccacctatgc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8921750 |
ataatacacatcggtgatcacctgtatcattccacctatgc |
8921710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7621644 - 7621884
Alignment:
| Q |
1 |
cttgtgcatgcacctttcaaacacataggaatcacagcagctgcatatatcacatacatcctgttagaagacatctgactagacataatcagacccttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7621644 |
cttgtgcatgcacctttcaaacacataggaaccacagcagctgcatatatcacatacatcctgttagaagacatctgactagacataatcagacccttat |
7621743 |
T |
|
| Q |
101 |
tttcatgatagaatttgcaactatcttcagaaaatacagtagtaagattcttctgctgcaattgacctatacttaacaaattgttcttcaaacgtggaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || || |
|
|
| T |
7621744 |
tttcatgatagaatttgcaactatctttagaaaataatgtagtaagattcttctgctgcaattgacctatactcaacaaattgttcctcaaacctgaaat |
7621843 |
T |
|
| Q |
201 |
ataatacacatcggtgatcacctgtatcattccacctatgc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7621844 |
ataatacacatcggtgatcacctgtatcattccacctatgc |
7621884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University