View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14249_low_19 (Length: 224)
Name: NF14249_low_19
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14249_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 39446352 - 39446184
Alignment:
| Q |
15 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggagaacttgggttcaattcttaagtgaaatattttttggtcaa |
114 |
Q |
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| T |
39446352 |
ataaccaaacatttgacctcaattgttgatgaactccaccgataacaaattttttaggagaatttggattcgattctaaagtgaaacatttgttggccaa |
39446253 |
T |
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| Q |
115 |
attttacttatctcccaaccgaattcaggattacgagagcccttctcgttgaaactagagggtaaatac |
183 |
Q |
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| T |
39446252 |
attttatttctctcccaaccgaattcaggattacgagagcccttctcgttgaaaccagagggtaaatac |
39446184 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 39467689 - 39467630
Alignment:
| Q |
15 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggag |
74 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||| |
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| T |
39467689 |
ataaccaaacatttgagattaattgttgatgaactccaccaaggacgatttttttaggag |
39467630 |
T |
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