View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14249_low_20 (Length: 216)

Name: NF14249_low_20
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14249_low_20
NF14249_low_20
[»] chr8 (1 HSPs)
chr8 (14-205)||(11225546-11225737)
[»] chr1 (9 HSPs)
chr1 (14-205)||(47743291-47743482)
chr1 (14-205)||(47700527-47700718)
chr1 (14-205)||(47715524-47715715)
chr1 (14-205)||(47757692-47757883)
chr1 (23-205)||(47710813-47710995)
chr1 (43-184)||(47771507-47771648)
chr1 (44-184)||(47775660-47775800)
chr1 (42-126)||(6514564-6514648)
chr1 (41-130)||(6525859-6525948)
[»] chr5 (1 HSPs)
chr5 (42-177)||(28826813-28826948)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 11225546 - 11225737
Alignment:
Q  14 tggagaaactggagagagggtacaatcacaaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  11225546 tggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttac 11225645  T
Q  114 tatgtgttcaagaaaattcggttgaaagaccaatcatggcaaccgttgtactcatgcttagtagttattctatttttctctctgtacctttg 205  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  11225646 tatgtgttcaagaaaatttggttgaaagaccaatcatggcaaccgttgtagtcatgcttagtagttattctatctttctctccgtacctttg 11225737  T

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Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 47743482 - 47743291
Alignment:
Q  14 tggagaaactggagagagggtacaatcacaaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  47743482 tggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttac 47743383  T
Q  114 tatgtgttcaagaaaattcggttgaaagaccaatcatggcaaccgttgtactcatgcttagtagttattctatttttctctctgtacctttg 205  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  47743382 tatgtgttcaagaaaatttggttgaaagaccaatcatggcaaccgttgtagtcatgcttagtagttattctatctttctctccgtacctttg 47743291  T

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Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 47700718 - 47700527
Alignment:
Q  14 tggagaaactggagagagggtacaatcacaaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttac 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  47700718 tggagaaactggagggagggtacaatcacaaatataatagatccatcattaaacaacggttcacaaaatgaaataatgagatgcattcacattgctttac 47700619  T
Q  114 tatgtgttcaagaaaattcggttgaaagaccaatcatggcaaccgttgtactcatgcttagtagttattctatttttctctctgtacctttg 205  Q
    |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||    
T  47700618 tatgtgttcaagaaaatttggttgaaagaccaaacatggcaaccattgtactcatgcttagtagttattctatgtctctctcggtacctttg 47700527  T

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Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 47715715 - 47715524
Alignment:
Q  14 tggagaaactggagagagggtacaatcacaaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  47715715 tggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttac 47715616  T
Q  114 tatgtgttcaagaaaattcggttgaaagaccaatcatggcaaccgttgtactcatgcttagtagttattctatttttctctctgtacctttg 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||| |||||||||||    
T  47715615 tatgtgttcaagaaaatttggttgaaagaccaatcatggcaaccgttgtactcatgcttagtagttattatatcactctcgctgtacctttg 47715524  T

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Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 47757883 - 47757692
Alignment:
Q  14 tggagaaactggagagagggtacaatcacaaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttac 113  Q
    |||||||||||||| | ||||||||||||||||||||| |||||| |||||| ||| ||||||| |||||| ||||||||||||||||||||||||||||    
T  47757883 tggagaaactggagggcgggtacaatcacaaatataattgatccatcattaagcaatggttcactaaatgaaataatgagatgcattcacattgctttac 47757784  T
Q  114 tatgtgttcaagaaaattcggttgaaagaccaatcatggcaaccgttgtactcatgcttagtagttattctatttttctctctgtacctttg 205  Q
    |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||    
T  47757783 tatgtgttcaagaaaatttggttgaaagaccaaccatggcaaccattgtactcatgcttagtagttattctatgtctctctctgtacctttg 47757692  T

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Target: chr1; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 47710995 - 47710813
Alignment:
Q  23 tggagagagggtacaatcacaaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttactatgtgttc 122  Q
    ||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  47710995 tggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttc 47710896  T
Q  123 aagaaaattcggttgaaagaccaatcatggcaaccgttgtactcatgcttagtagttattctatttttctctctgtacctttg 205  Q
    ||||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||||||| | | ||||||||||||||||    
T  47710895 aagaaaatttggttgaaagaccaactatggcaaccgttgcactcatgcttagtagttattctttatctctctctgtacctttg 47710813  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 47771507 - 47771648
Alignment:
Q  43 aaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttactatgtgttcaagaaaattcggttgaaaga 142  Q
    |||||| |||||| || ||||||||||   ||||  |||||| |||||||||||||| || ||||  ||||| |||||||||||||||   ||||| |||    
T  47771507 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacaga 47771606  T
Q  143 ccaatcatggcaaccgttgtactcatgcttagtagttattct 184  Q
    |||| |||||| || |||| ||||||||||| ||||||||||    
T  47771607 ccaaccatggctactgttgcactcatgcttaatagttattct 47771648  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 47775660 - 47775800
Alignment:
Q  44 aatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttactatgtgttcaagaaaattcggttgaaagac 143  Q
    ||||| ||||||||| ||||||||||   ||||  |||||| ||||||||||| || || ||||| ||||| |||||||||||||||   ||||| ||||    
T  47775660 aatattatagatccagcattaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagac 47775759  T
Q  144 caatcatggcaaccgttgtactcatgcttagtagttattct 184  Q
    ||| ||||||  | |||| ||||||||||| ||||||||||    
T  47775760 caaccatggctgctgttgcactcatgcttaatagttattct 47775800  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 6514648 - 6514564
Alignment:
Q  42 caaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttactatgtgttcaaga 126  Q
    ||||||| ||||||||| |||||||||| |  |||| |||||||||||||||||| || || ||||  ||||| |||||||||||    
T  6514648 caaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtatccatattggattactttgtgttcaaga 6514564  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 6525859 - 6525948
Alignment:
Q  41 acaaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttactatgtgttcaagaaaat 130  Q
    |||||| | ||||||||  |||||||||| | ||||   || || |||||||||||||| |||||||  ||||| |||||||||||||||    
T  6525859 acaaatgttatagatcccacattaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaat 6525948  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 28826948 - 28826813
Alignment:
Q  42 caaatataatagatccaccattaaacaacggttcacgaaatgagataatgagatgcattcacattgctttactatgtgttcaagaaaattcggttgaaag 141  Q
    ||||||| |||||||||  |||| ||||| ||||| ||||||| || |||||||||||||| ||||  ||||||||||| ||||| |||   | | || |    
T  28826948 caaatattatagatccattattatacaacagttcaagaaatgaaatcatgagatgcattcatattggcttactatgtgtccaagacaatgtagctaaacg 28826849  T
Q  142 accaatcatggcaaccgttgtactcatgcttagtag 177  Q
    ||||| |||||| ||| ||| ||||||||| |||||    
T  28826848 accaaccatggctaccattgcactcatgctaagtag 28826813  T

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