View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14249_low_22 (Length: 210)
Name: NF14249_low_22
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14249_low_22 |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: scaffold0271 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 20041 - 19863
Alignment:
| Q |
13 |
aaaggtacaattagtactttgcccacaatccaaaataaaacattaagcataaggaacaattaacaaaccaatttatcataaaattaataaactaaactca |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
20041 |
aaaggtacaattagtactttacccacaatccaaaataaaacattaagcataaagaacaattaacaaaccaatttatcataaaattaataagc--aactca |
19944 |
T |
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| Q |
113 |
tatttttaagaattgaatttactacctttcaaataaaaattacaaagacaattcagaatatgatataaaaatgatgtattt |
193 |
Q |
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| T |
19943 |
tatttttaagaattgaatttactacctttcaaataaaaattacaaagacaaatcataatatgatataaaaatgatgtattt |
19863 |
T |
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Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 41410603 - 41410784
Alignment:
| Q |
13 |
aaaggtacaattagtactttgcccacaatccaaaataaaacattaagcataaggaacaattaacaaaccaatttatcataaaattaataaactaaactca |
112 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41410603 |
aaaggtacaatgggtactttacccacaatccaaaataaaacattaagcataaggaacaattaacaaaccaatttgtcataaaattaataaactaaactca |
41410702 |
T |
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| Q |
113 |
tatttttaagaattgaatttactacctttcaaataaaaattac-aaagacaattcagaatatgatataaaaatgatgtattt |
193 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||||||||||||||||| ||||| |
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| T |
41410703 |
tatttttaagaattgaatttactaccttttaaataaaaattacaaaagacaaatcaggatatgatataaaaatgatttattt |
41410784 |
T |
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