View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14249_low_3 (Length: 557)

Name: NF14249_low_3
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14249_low_3
NF14249_low_3
[»] chr2 (1 HSPs)
chr2 (16-557)||(38891686-38892232)
[»] chr7 (3 HSPs)
chr7 (396-471)||(31795654-31795729)
chr7 (262-299)||(29392515-29392552)
chr7 (286-362)||(22189749-22189825)
[»] chr8 (1 HSPs)
chr8 (275-361)||(2615158-2615244)
[»] chr5 (2 HSPs)
chr5 (236-422)||(34981081-34981268)
chr5 (255-305)||(16388148-16388197)
[»] chr1 (4 HSPs)
chr1 (403-493)||(12380575-12380664)
chr1 (403-493)||(12384642-12384731)
chr1 (444-493)||(12363599-12363648)
chr1 (272-361)||(21932222-21932311)


Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 38891686 - 38892232
Alignment:
Q  16 aggtacaagagaaaagaaaagaaaaagttccatagaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatata--gtc 113  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  38891686 aggtacaagagaaaagaaaagaaaaaattccatacaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatatatagtc 38891785  T
Q  114 ccaaccttccttttcctttataatac---gtaatgtgagacttcttcaacatatatttttcaactaataccaacaatcttcatctccattgaaaatggta 210  Q
    ||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38891786 ccaacctcccttttcctttataatactaggtaatgtgagacttcttcaacatatatttttcaactaacaccaacaatcttcatctccattgaaaatggta 38891885  T
Q  211 catatactgtcattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatgaac 310  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38891886 catatattgtcattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatgaac 38891985  T
Q  311 tttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctctcacacactttgcatca 410  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38891986 tttcacatgtcgaaaattagtttgaaaacttatggtgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgcatca 38892085  T
Q  411 atttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacatttttaacttgaattttccacaagccaaaaaatgattctt 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38892086 atttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaagccaaaaaatgattctt 38892185  T
Q  511 ccatcaattctctctcgtccaaacttcacaacgaaacttgtgattgt 557  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  38892186 ccatcaattctctctcgtccaaacttcacaacggaacttgtgattgt 38892232  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 31795654 - 31795729
Alignment:
Q  396 acacactttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacat 471  Q
    |||||||||| |||||| |||| |||||  | ||||||||  ||||||||||||||| ||||||||||||||||||    
T  31795654 acacactttgtatcaatgtcaaccaatgcgcgtgtactaatcaacaccttgtgtaatcttgattgtatcaacacat 31795729  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 29392552 - 29392515
Alignment:
Q  262 atccaccataaagagtatattttacttgaagttaaacc 299  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  29392552 atccaccataaagggtatactttacttgaagttaaacc 29392515  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 22189749 - 22189825
Alignment:
Q  286 cttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttga 362  Q
    |||| |||||||||||| || ||| |||||||| | |||||| || ||||||||||| |  ||| ||||||||||||    
T  22189749 cttgtagttaaaccacttcaagaattttcacatatcgaaaatgaggttgaaaacttaaggagcaacttccatgttga 22189825  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 2615158 - 2615244
Alignment:
Q  275 agtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg 361  Q
    |||||| |||||||||||||||| ||||||| ||| ||| |||||||||||||  |  ||||||||||| ||||| ||| |||||||    
T  2615158 agtatactttacttgaagttaaaacactccaagaatttttacatgttgaaaatccggctgaaaacttataatgcaactttcatgttg 2615244  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 422
Target Start/End: Original strand, 34981081 - 34981268
Alignment:
Q  236 caatcatcattcaaaa-aactatcataatccaccataaagagtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttg 334  Q
    |||||||  ||||||| |||||||||| |||| |||||| | |||| || ||| ||| |||||||||||||  || ||||||||||  ||||| |   |     
T  34981081 caatcatagttcaaaagaactatcatactccatcataaaaaatatacttcactcgaatttaaaccactccaataattttcacatgtcaaaaatcatgcta 34981180  T
Q  335 aaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctctcacacactttgcatcaatttcaatcaat 422  Q
    |||||||||  |||| ||||||| ||| ||||||| | |||||   | ||  |||||||  ||||||||||||||||| |||||||||    
T  34981181 aaaacttatcgtgcaacttccatattggttgaaaactcttcaaccactgacataatctcaaacacactttgcatcaatgtcaatcaat 34981268  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 16388197 - 16388148
Alignment:
Q  255 tatcataatccaccataaagagtatattttacttgaagttaaaccactcca 305  Q
    ||||||| ||||||||||||||||||  | |||||||||||||||||||||    
T  16388197 tatcatactccaccataaagagtata-atcacttgaagttaaaccactcca 16388148  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 493
Target Start/End: Complemental strand, 12380664 - 12380575
Alignment:
Q  403 ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacatttttaacttgaattttccacaa 493  Q
    |||||||||| ||||||||||  ||| ||||||  || |  ||||||||| |||| ||||||||||||||||| ||||||||||| |||||    
T  12380664 ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12380575  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 493
Target Start/End: Complemental strand, 12384731 - 12384642
Alignment:
Q  403 ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacatttttaacttgaattttccacaa 493  Q
    |||||||||| ||||||||||  ||| ||||||  || |  ||||||||| |||| ||||||||||||||||| ||||||||||| |||||    
T  12384731 ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12384642  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 12363648 - 12363599
Alignment:
Q  444 ttgtgtaatattgattgtatcaacacatttttaacttgaattttccacaa 493  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||| |||||    
T  12363648 ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12363599  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 21932222 - 21932311
Alignment:
Q  272 aagagtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg 361  Q
    ||||||||| || |||||||||| ||| | | || |||||||||||||| |||| | |  ||||||||||||  |||| |||||||||||    
T  21932222 aagagtatacttcacttgaagttgaactatttcaagaactttcacatgtcgaaattcaagttgaaaacttattgtgcaacttccatgttg 21932311  T

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