View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14249_low_6 (Length: 370)
Name: NF14249_low_6
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14249_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 1258179 - 1258524
Alignment:
| Q |
10 |
aacaatatcaaaagcactcaaaaccggtttcaacattgaaactcatcaattttttagacagtttcgtaatcagttaaacgactctttggtcgttgaagtc |
109 |
Q |
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| T |
1258179 |
aacaatatcaaaagcactcaaaaccggtttcaacattgaaactcatcaattttttagacagtttcgtaatcagttaaacgactctttggtcgttgaagtc |
1258278 |
T |
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| Q |
110 |
atgaacaatgtcaaaaaccctgagttgtgtgtgaagtttttcttgtgggctggtagacaaattggttacagtcacaccccccaagtgttcgataaattgc |
209 |
Q |
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| T |
1258279 |
atgaacaatgtcaaaaaccctgagttgtgtgtgaagtttttcttgtgggctggtagacaaattggttacagtcacaccccccaagtgttcgataaattgc |
1258378 |
T |
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| Q |
210 |
tcaacttattaggatgcaatgaaaatgccaatgatagagtgcctttaaagtttttgatggaaattaaggatgatgattgtgaattgcttcgtagattgct |
309 |
Q |
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| T |
1258379 |
ttgacttattaggatgcaatgtaaatgccgatgatagagtgcctttaaagtttttgatggaaattaaggatgatgatcatgaattgcttcgtagattgct |
1258478 |
T |
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| Q |
310 |
taattttctagttcgaaagtgttgtcgaaatgggtggtggaatatg |
355 |
Q |
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| T |
1258479 |
taattttctagttcgaaagtgttgtcgaaatgggtggtggaatatg |
1258524 |
T |
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Back To:
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 17691954 - 17692019
Alignment:
| Q |
14 |
atatcaaaagcactcaaaaccggtttcaacattgaaactcatcaattttttagacagtttcgtaat |
79 |
Q |
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| T |
17691954 |
atatcaaaagcactaaaaaccggtttcaacattgaaacccatcaattttttcgaaagtttcgtaat |
17692019 |
T |
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