View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14249_low_9 (Length: 292)

Name: NF14249_low_9
Description: NF14249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14249_low_9
NF14249_low_9
[»] chr2 (7 HSPs)
chr2 (172-286)||(10554899-10555013)
chr2 (11-66)||(10554756-10554811)
chr2 (9-62)||(45443546-45443599)
chr2 (11-61)||(16313576-16313626)
chr2 (11-62)||(44798850-44798901)
chr2 (11-61)||(44456805-44456855)
chr2 (19-62)||(8034975-8035019)
[»] chr4 (2 HSPs)
chr4 (11-61)||(48349490-48349540)
chr4 (11-62)||(24897026-24897077)
[»] chr7 (1 HSPs)
chr7 (9-66)||(44709886-44709943)
[»] chr8 (2 HSPs)
chr8 (11-62)||(11266174-11266225)
chr8 (11-61)||(5347469-5347519)
[»] chr5 (2 HSPs)
chr5 (11-62)||(7338661-7338712)
chr5 (12-61)||(27308715-27308764)
[»] chr1 (1 HSPs)
chr1 (11-61)||(9640884-9640934)
[»] chr6 (3 HSPs)
chr6 (9-62)||(8525566-8525619)
chr6 (18-62)||(11369079-11369123)
chr6 (11-62)||(32173702-32173754)
[»] chr3 (2 HSPs)
chr3 (17-61)||(14279148-14279192)
chr3 (18-62)||(33392552-33392596)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 10554899 - 10555013
Alignment:
Q  172 gacaagggtgcactttgaactttgaacttcgtagctttcaataagttcaaaagaggaacgttcagaaaagcaaacgaatttctcaatttgttgcgttccg 271  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10554899 gacaaaggtgcactttgaactttgaacttcgtagctttcaataagttcaaaagaggaacgttcagaaaagcaaacgaatttctcaatttgttgcgttccg 10554998  T
Q  272 cgttgaagtgttctt 286  Q
    |||||||||||||||    
T  10554999 cgttgaagtgttctt 10555013  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 10554756 - 10554811
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcattttgtgat 66  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  10554756 gaagaggctttttgaaaattaaattttataaaagagtaattttatcattttgtgat 10554811  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 45443546 - 45443599
Alignment:
Q  9 atgaagaggctttttgagaattaaattttataaaaaagtaattttatcattttg 62  Q
    ||||||||||||||||| ||||||||||||| |||  |||||||||||||||||    
T  45443546 atgaagaggctttttgaaaattaaattttatgaaagggtaattttatcattttg 45443599  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 16313576 - 16313626
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcatttt 61  Q
    ||||| ||||||||| ||||||||||||||||| | |||||||||||||||    
T  16313576 gaagatgctttttgaaaattaaattttataaaagattaattttatcatttt 16313626  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 44798901 - 44798850
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcattttg 62  Q
    ||||||||||||||| | ||||||||||| ||| ||||||||| ||||||||    
T  44798901 gaagaggctttttgaaacttaaattttatgaaagagtaattttgtcattttg 44798850  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 44456805 - 44456855
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcatttt 61  Q
    ||||| ||||||||| ||||||||||||| |||  ||||||||||||||||    
T  44456805 gaagatgctttttgaaaattaaattttatgaaagggtaattttatcatttt 44456855  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 8034975 - 8035019
Alignment:
Q  19 tttttgagaattaaattttataaaaaagtaa-ttttatcattttg 62  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||||    
T  8034975 tttttgaaaattaaattttataaaaaaataatttttatcattttg 8035019  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 48349490 - 48349540
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcatttt 61  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  48349490 gaagagtctttttgaaaattaaattttataaaaaggtaattttatcatttt 48349540  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 24897077 - 24897026
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcattttg 62  Q
    ||||||||||||||| | ||||||||||| ||| ||||||||| ||||||||    
T  24897077 gaagaggctttttgaaacttaaattttatgaaagagtaattttgtcattttg 24897026  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 44709886 - 44709943
Alignment:
Q  9 atgaagaggctttttgagaattaaattttataaaaaagtaattttatcattttgtgat 66  Q
    ||||||| ||||||||| |||||||||||||||||   ||||||||||||||| ||||    
T  44709886 atgaagatgctttttgaaaattaaattttataaaaggataattttatcattttatgat 44709943  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 11266225 - 11266174
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcattttg 62  Q
    ||||| ||||||||| |||||||||||||| || |||||| |||||||||||    
T  11266225 gaagatgctttttgaaaattaaattttatagaagagtaatcttatcattttg 11266174  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 5347469 - 5347519
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcatttt 61  Q
    ||||||||||||||| | ||||||||||| |||  ||||||||||||||||    
T  5347469 gaagaggctttttgaaacttaaattttatgaaagggtaattttatcatttt 5347519  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 7338712 - 7338661
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcattttg 62  Q
    ||||| ||||||||| ||||||||||||| |||| |||||||| ||||||||    
T  7338712 gaagatgctttttgaaaattaaattttatgaaaaggtaattttgtcattttg 7338661  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 27308764 - 27308715
Alignment:
Q  12 aagaggctttttgagaattaaattttataaaaaagtaattttatcatttt 61  Q
    |||||||||| ||| ||||||||||||| ||||  |||||||||||||||    
T  27308764 aagaggctttctgaaaattaaattttatgaaaagataattttatcatttt 27308715  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 9640884 - 9640934
Alignment:
Q  11 gaagaggctttttgagaattaaattttataaaaaagtaattttatcatttt 61  Q
    ||||| ||||||||| |||||||||||||||||  |||||||| |||||||    
T  9640884 gaagatgctttttgaaaattaaattttataaaagggtaattttgtcatttt 9640934  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 8525619 - 8525566
Alignment:
Q  9 atgaagaggctttttgagaattaaattttataaaaaagtaattttatcattttg 62  Q
    ||||||| ||||||||| |||||||||||||  ||  |||||||||||||||||    
T  8525619 atgaagatgctttttgaaaattaaattttatggaagggtaattttatcattttg 8525566  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 11369079 - 11369123
Alignment:
Q  18 ctttttgagaattaaattttataaaaaagtaattttatcattttg 62  Q
    |||||||| |||||||||||||| || ||||||||| ||||||||    
T  11369079 ctttttgaaaattaaattttatagaagagtaattttgtcattttg 11369123  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 32173702 - 32173754
Alignment:
Q  11 gaagaggcttttt-gagaattaaattttataaaaaagtaattttatcattttg 62  Q
    ||||||||||||| || |||||||||||||||||  |||||||| ||||||||    
T  32173702 gaagaggcttttttgaaaattaaattttataaaatggtaattttgtcattttg 32173754  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 14279192 - 14279148
Alignment:
Q  17 gctttttgagaattaaattttataaaaaagtaattttatcatttt 61  Q
    ||||||||| |||||||||||||  |||||||||||| |||||||    
T  14279192 gctttttgaaaattaaattttatggaaaagtaattttgtcatttt 14279148  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 33392596 - 33392552
Alignment:
Q  18 ctttttgagaattaaattttataaaaaagtaattttatcattttg 62  Q
    |||||||| ||||||||||||| |||| |||||||| ||||||||    
T  33392596 ctttttgaaaattaaattttatgaaaaggtaattttgtcattttg 33392552  T

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