View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14250_high_3 (Length: 350)
Name: NF14250_high_3
Description: NF14250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14250_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 14694533 - 14694830
Alignment:
| Q |
17 |
aatatttcaatccgctctaggtatttattagttaatgttgcccaaacttcatgtatgccagaaaagattgttaattgtatatgttatgttttgttctaag |
116 |
Q |
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| T |
14694533 |
aatatttcaatccgctctaggtatttattagttaatgttgcccaaacttcatatatgccagaaaagattgttaattgtatatgttctgttttgttctaag |
14694632 |
T |
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| Q |
117 |
aaaagtattcaattcttggtcaaactttacttactgtccagcctaaattcagattacaaggccccttttcgtcgggaaacggagggttgagat--nnnnn |
214 |
Q |
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| T |
14694633 |
aaaagtattcaattcttggtcaaactttacttactgtccagcctaaattcagattacaaggccccttttcgtcgggaaacggagggttgagataaaaaaa |
14694732 |
T |
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| Q |
215 |
nnnnngtttcacatattaacacctcctttcctggcattccttggcataaataaaagaacaattccaacatttgtcttgttttcttgtgcaacaataag |
312 |
Q |
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| T |
14694733 |
aaaaagtttcgcatattaacacctcctttcctggcattccttggcataaataaaagaacaattccaacatttgtcttgttttcttgtgcaacaataag |
14694830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 50228119 - 50228006
Alignment:
| Q |
30 |
gctctaggtatttattagttaatgttgcccaaacttcatgtatgccagaaaagattgttaattgtatatgttatgttttgttctaagaaaagtattcaat |
129 |
Q |
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||||||||||||||| ||||| |||||| |||||||||| ||||||| |||| || ||||||||||||| |||||||| | |||| |||| |||||||| |
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| T |
50228119 |
gctctaggtatttatcagttactgttgcgcaaacttcatatatgccaaaaaatat-gttaattgtatatattatgtttcttcctaacaaaaatattcaat |
50228021 |
T |
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| Q |
130 |
tcttggtcaaacttt |
144 |
Q |
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| T |
50228020 |
tcttggtcagacttt |
50228006 |
T |
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