View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14250_low_2 (Length: 587)
Name: NF14250_low_2
Description: NF14250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14250_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 2 - 574
Target Start/End: Original strand, 1984444 - 1985016
Alignment:
| Q |
2 |
gatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgtttgttttagcat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1984444 |
gatccaaccgatgattcgtatgcaaccaagtttcgaagaaaaacttcggtgttgacatccaaactaattgtgggaaggtgaaaagtgtttgttttagcat |
1984543 |
T |
|
| Q |
102 |
caaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcctccaccaaggg |
201 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1984544 |
caaaactaatgcttgatatgcttccttttgcaggtaagaaattaacccctgcagtcacaagttgttcaacagaaggaatagcgatttcctccaccaaggg |
1984643 |
T |
|
| Q |
202 |
tgttttgttctttagagtacttgagttttcatcgtttggtttttcctcttctttcttttgagagtttaacaagtgttcaataggttgttttacaagtttg |
301 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
1984644 |
tgttttgttctttagagtactagagttttcatcttttggtttttcctcttctttcttttgagtgtttaaaaagtattcaataggttgttttacaagtttg |
1984743 |
T |
|
| Q |
302 |
atacctggaaggtttgttatgttttcccaaggtaattttttaaggacttttagaggtgcagatataagtacctttttaattccatgcaaaggccctttga |
401 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1984744 |
attcctggaaggttggttatgttttcccaaggtaactttttaaggacttttagaggtgcagatataagtacctttttgattccatgcaaaggccctttga |
1984843 |
T |
|
| Q |
402 |
ttagctttgaaagaaatttccaaagtatactcaaaaatttcttaacatggatggaatcattagttgatgaattttcatctccttcttgttgatccacttc |
501 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1984844 |
ttatctttgaaagaaatttccaaagtatactcaaaaatttcttaacatggatggaatcattagttgatgatttttcatctccttcttgttgatccacttc |
1984943 |
T |
|
| Q |
502 |
ttgttgaatctcaacttcaatgatgtcatgttgtttttctaattttggcacaatcatgtcatacaaaaaatct |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1984944 |
ttgttgaatctcaacttcaatgatgtcatgttgtttttctaattttggcacaatcatgtcatacaaaaaatct |
1985016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 1977523 - 1977724
Alignment:
| Q |
2 |
gatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgtttgttttagcat |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1977523 |
gatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgtttgttttagcat |
1977622 |
T |
|
| Q |
102 |
caaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcctccaccaaggg |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||| |||||| |||| ||| || |
|
|
| T |
1977623 |
caaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcatccatcaaagg |
1977722 |
T |
|
| Q |
202 |
tg |
203 |
Q |
| |
|
|| |
|
|
| T |
1977723 |
tg |
1977724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 1948883 - 1948696
Alignment:
| Q |
2 |
gatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgtttgttttagcat |
101 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| | ||||||||||| || |||||||||| || | ||||||| |||||| ||||||| |||| |
|
|
| T |
1948883 |
gatccaaccgatgattcatacgcaaccaagtttcttagaaaaacttcggtattaacatccaaaccgataataggaaggtaaaaagttcttgtttttgcat |
1948784 |
T |
|
| Q |
102 |
caaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttc |
189 |
Q |
| |
|
||||| |||| ||||||||||| ||||| ||||| | ||||| || || | ||||||||| || ||||||||||||||||||||| |
|
|
| T |
1948783 |
caaaactaatacttgatatgctcccattagtaggagaaaaattcactcctgatttcacaagttctttaacagaaggaatagtgatttc |
1948696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University