View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14250_low_4 (Length: 357)
Name: NF14250_low_4
Description: NF14250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14250_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 1460031 - 1460370
Alignment:
| Q |
16 |
cttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatccta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460031 |
cttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatccta |
1460130 |
T |
|
| Q |
116 |
tctacctcctcctccacagcctccaccgttgaagtttccggctgagacattctgttacgacggcaaggtgttcttcatgattaggttgacaaacagggtt |
215 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1460131 |
tctacctcctcctccatagcctccaccgctgaagtttccggctgagacattctgttacgacggcaaggtgttcttcatgattaggttgacagacagggtt |
1460230 |
T |
|
| Q |
216 |
agggttggaagcgaatagcttttaaaagcaacaagaattagggtttcgataggcaaggtttacacttgaattgggttgggccgtatttca------ccaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1460231 |
agggttggaagcgaatagcttttaaaagcaacaagaattagggtttcgataggcaaggtttacacttgaattgggttgggccgtatttcaccaaatccaa |
1460330 |
T |
|
| Q |
310 |
atccaaatcaatcagttgtctttagaaaattattcatctc |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1460331 |
atccaaatcaatcagttgtctttagaaaattattcatctc |
1460370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 1446682 - 1446786
Alignment:
| Q |
16 |
cttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatccta |
115 |
Q |
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|||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||| |||| |||||| |
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| T |
1446682 |
cttccatctctttgaaagaatggaagtgagaaaggcttgtttggtgggaagagaagagagaatttgaattaggatatcgtctggtaaactgcttatccta |
1446781 |
T |
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| Q |
116 |
tctac |
120 |
Q |
| |
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||||| |
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| T |
1446782 |
tctac |
1446786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 12094184 - 12094079
Alignment:
| Q |
16 |
cttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatccta |
115 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
12094184 |
cttccatctctttgaaagaattgaagtgacaaaggcttgtttggtgggaaaagaagacagaatgtgaatcaggatatcgtctggtaaattgctgatccta |
12094085 |
T |
|
| Q |
116 |
tctacc |
121 |
Q |
| |
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|||||| |
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| T |
12094084 |
tctacc |
12094079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 12104524 - 12104419
Alignment:
| Q |
16 |
cttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatccta |
115 |
Q |
| |
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|||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||||||| || |
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| T |
12104524 |
cttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcgtctgataaattgctgatcata |
12104425 |
T |
|
| Q |
116 |
tctacc |
121 |
Q |
| |
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|||||| |
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| T |
12104424 |
tctacc |
12104419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 820515 - 820412
Alignment:
| Q |
18 |
tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc |
117 |
Q |
| |
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|||||| ||||||||||| |||||| ||||||||||||||||| |||| || ||||||||| |||| ||||||||||| ||||| || |||||||||| |
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| T |
820515 |
tccatcgctttgaaagaatggaagtgacaaaggcttgtttggtaggaacagaagagagaatatgaatcaggatatcatccagtaaactgttgatcctatc |
820416 |
T |
|
| Q |
118 |
tacc |
121 |
Q |
| |
|
|||| |
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|
| T |
820415 |
tacc |
820412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 409220 - 409117
Alignment:
| Q |
18 |
tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc |
117 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||||||||| | |||||||||||||| || || || ||||||||| | | |||||||| |
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| T |
409220 |
tccatctctttgaaagaatggatgtgacaaaggcttgtttggtgggaacaaaagagagaatgtgaatcagaatctcgtctggtaaacttccaatcctatc |
409121 |
T |
|
| Q |
118 |
tacc |
121 |
Q |
| |
|
|||| |
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|
| T |
409120 |
tacc |
409117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 997471 - 997570
Alignment:
| Q |
18 |
tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc |
117 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||||||||||||||||||| | |||||||||||| | |||||| || || |||||| | | ||||||||| |
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| T |
997471 |
tccatcgctttgaaagaatggaagttgcgaaggcttgtttggtgggaacaaaagagagaatgtggattaggatctcgtccggtaaacttccgatcctatc |
997570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 975622 - 975723
Alignment:
| Q |
18 |
tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc |
117 |
Q |
| |
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|||||| ||||||||||| |||||| ||| ||||||||| ||||||||| |||||||||| ||| ||||| || || || ||| |||| |||||||| |
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| T |
975622 |
tccatcgctttgaaagaatggaagtgacacaggcttgttcaatgggaagagaagagagaatgcgaatcaggatgtcgtcgggaaaactgctaatcctatc |
975721 |
T |
|
| Q |
118 |
ta |
119 |
Q |
| |
|
|| |
|
|
| T |
975722 |
ta |
975723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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