View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14250_low_6 (Length: 263)
Name: NF14250_low_6
Description: NF14250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14250_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 15241941 - 15241713
Alignment:
| Q |
9 |
gagaagcaaaggactcgaccaaaacacagaacaaaatatcagtgttttcaaatgcagatcacggaaaatgatagtttgttcaaatttaactacacaccac |
108 |
Q |
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| T |
15241941 |
gagaatcaaaagacttgaccaaaacacagaacaaaatatcagtgttttcaaatgcagatcacggaaaatgatagtttgttcaaatttaactacacaccac |
15241842 |
T |
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| Q |
109 |
accactatatatagacctatttgacaacattttatgctaatagagagtattgaaaaacagcaatattgtaaacgatttactgcaacaaaagaacatcatt |
208 |
Q |
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| T |
15241841 |
accac----tatagacctatttgacaacattttgtgctaatagagagtattgcaaaa---caacattgtaaacgatttactgcaacaaaagaacatcatt |
15241749 |
T |
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| Q |
209 |
aacgtcacattatcatataacaacaagaagggataa |
244 |
Q |
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| T |
15241748 |
aacgtcacattatcatataacaacaagaagggataa |
15241713 |
T |
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Back To:
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 34227444 - 34227386
Alignment:
| Q |
46 |
atcagtgttttcaaatgcagatcacggaaaatgatagtttgttcaaatttaactacaca |
104 |
Q |
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| T |
34227444 |
atcagtgttgtcaattgccgatcatggaaaataacagtttgttcaaatttcactacaca |
34227386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 33651792 - 33651744
Alignment:
| Q |
56 |
tcaaatgcagatcacggaaaatgatagtttgttcaaatttaactacaca |
104 |
Q |
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| T |
33651792 |
tcaattgcagatcacagaaaatagtagtttgttcaaatttagctacaca |
33651744 |
T |
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