View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14250_low_9 (Length: 203)

Name: NF14250_low_9
Description: NF14250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14250_low_9
NF14250_low_9
[»] chr4 (6 HSPs)
chr4 (17-190)||(28787952-28788125)
chr4 (84-190)||(24856229-24856335)
chr4 (84-190)||(24853338-24853444)
chr4 (48-190)||(51246614-51246749)
chr4 (48-190)||(17525460-17525597)
chr4 (84-190)||(28787002-28787106)
[»] scaffold0406 (1 HSPs)
scaffold0406 (84-190)||(6272-6378)
[»] chr7 (1 HSPs)
chr7 (84-190)||(22622375-22622481)
[»] chr5 (5 HSPs)
chr5 (103-190)||(5046440-5046527)
chr5 (103-190)||(5047211-5047298)
chr5 (103-190)||(5047982-5048069)
chr5 (115-190)||(5663780-5663855)
chr5 (84-141)||(5664821-5664877)
[»] chr8 (1 HSPs)
chr8 (84-174)||(1275201-1275291)
[»] chr3 (3 HSPs)
chr3 (103-190)||(12738183-12738270)
chr3 (103-190)||(12739334-12739421)
chr3 (138-190)||(15023051-15023103)
[»] chr2 (2 HSPs)
chr2 (48-182)||(20978804-20978940)
chr2 (88-176)||(33798848-33798936)
[»] chr1 (4 HSPs)
chr1 (84-190)||(22055466-22055571)
chr1 (110-190)||(22056567-22056646)
chr1 (82-183)||(29371902-29372004)
chr1 (48-80)||(22056518-22056550)
[»] scaffold0272 (1 HSPs)
scaffold0272 (84-123)||(3559-3598)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 28788125 - 28787952
Alignment:
Q  17 agtaaggataagagtacacacattagaaattaggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaa 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28788125 agtaaggataagaggacacacattagaaattaggagagaatatcatgtggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaa 28788026  T
Q  117 tacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28788025 tacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctaggcctttg 28787952  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 24856335 - 24856229
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 183  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24856335 aatattattgacattgcatcttaaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatctag 24856236  T
Q  184 gcctttg 190  Q
    |||||||    
T  24856235 gcctttg 24856229  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 24853444 - 24853338
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 183  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| |||||| ||||||||||||||| |||    
T  24853444 aatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaataatttag 24853345  T
Q  184 gcctttg 190  Q
    |||||||    
T  24853344 gcctttg 24853338  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 51246749 - 51246614
Alignment:
Q  48 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttatag 147  Q
    |||||||||||| || ||||||||||||||||||||       |||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  51246749 aggagagaatatgatttggtgaagccttcaatatta-------ttgacattacatcccaaaggcttgaatacaattgcacccatataagtctacttatag 51246657  T
Q  148 gtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    ||| ||| | |||||||||||||||||||||||||||||||||    
T  51246656 gtgcttgtagatgtttctagaactagaataatctaggcctttg 51246614  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 17525460 - 17525597
Alignment:
Q  48 aggagagaatatcatatggtgaagccttcaatattaaatattattgaca--ttgcatcttaaaggcttgaatacaattgcacccatatatgtctatttat 145  Q
    |||||||||||| |||||||||||||||||||||||       ||||||  |||||||| |||||||||||||||||| ||| |||||| ||||||||||    
T  17525460 aggagagaatatgatatggtgaagccttcaatatta-------ttgacacattgcatctcaaaggcttgaatacaatttcacacatataagtctatttat 17525552  T
Q  146 aggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    | | | ||| | |||||||||||||||||||||||||||||||||    
T  17525553 aagcgcttgtagatgtttctagaactagaataatctaggcctttg 17525597  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 28787106 - 28787002
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 183  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||    
T  28787106 aatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaact--aataatttag 28787009  T
Q  184 gcctttg 190  Q
    |||||||    
T  28787008 gcctttg 28787002  T

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Target: scaffold0406 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 6378 - 6272
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 183  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||    
T  6378 aatattattgacattgcatctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctag 6279  T
Q  184 gcctttg 190  Q
    |||||||    
T  6278 gcctttg 6272  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 22622375 - 22622481
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 183  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| |||  |||| |||||||||||| |||||||||||||    
T  22622375 aatattattgacatggcatctcaaaggcttgaatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctag 22622474  T
Q  184 gcctttg 190  Q
    | |||||    
T  22622475 gtctttg 22622481  T

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Target: chr5 (Bit Score: 64; Significance: 3e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 5046527 - 5046440
Alignment:
Q  103 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||    
T  5046527 cttaaaggcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5046440  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 5047298 - 5047211
Alignment:
Q  103 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | ||||||||| |||||||||||||||||||||||    
T  5047298 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5047211  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 5048069 - 5047982
Alignment:
Q  103 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | |||||| || |||||||||||||||||||||||    
T  5048069 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttg 5047982  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 5663780 - 5663855
Alignment:
Q  115 aatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    |||||||| |||||||||||  |||||||||| ||| ||||| ||||||||| |||||||| | ||||||||||||    
T  5663780 aatacaatcgcacccatataattctatttataagtgattgaagatgtttctaaaactagaagagtctaggcctttg 5663855  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 5664821 - 5664877
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctat 141  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||    
T  5664821 aatattattgtcattgtat-ttaaaagcttgaatacaattgcacccatataagtctat 5664877  T

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Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 1275201 - 1275291
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactaga 174  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||  | || ||||||||| |||||  ||||||||||||||||    
T  1275201 aatattattgacattgcatcttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 12738270 - 12738183
Alignment:
Q  103 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||| ||| | ||||||||||||||| ||| |||||||| ||||    
T  12738270 cttaaaggcttgaatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctaggcttttg 12738183  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 12739421 - 12739334
Alignment:
Q  103 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||| || ||| | ||||||||||||||| |||||||||||| ||||    
T  12739421 cttaaaggcttgaatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttg 12739334  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 15023103 - 15023051
Alignment:
Q  138 ctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    ||||||||||||| ||| | ||||||||||||||| |||||||||||| ||||    
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatctaggcatttg 15023051  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 20978804 - 20978940
Alignment:
Q  48 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatct--------taaaggcttgaatacaattgcacccatatatgtct 139  Q
    |||||||||||| |||||||||||||||||||||||       ||||||||||||||        |||||||||||||| ||| ||||||||||| || |    
T  20978804 aggagagaatatgatatggtgaagccttcaatatta-------ttgacattgcatctcaaaggtttaaaggcttgaatataatggcacccatataagttt 20978896  T
Q  140 atttataggt-gtttgaaaatgtttctagaactagaataatcta 182  Q
    ||||||||||  |||| | |||||||||||||||||||||||||    
T  20978897 atttataggtactttgtagatgtttctagaactagaataatcta 20978940  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 33798848 - 33798936
Alignment:
Q  88 ttattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaat 176  Q
    |||||||| || ||||| ||||||||||||||||||||||  ||   | ||||||||||| |  ||||| |||||||||||| ||||||    
T  33798848 ttattgacgttacatctcaaaggcttgaatacaattgcacatatgcttatctatttatagatccttgaagatgtttctagaagtagaat 33798936  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 22055466 - 22055571
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 183  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||  |  | ||||||||||| ||| ||||| ||| ||||||||||| ||||||||||    
T  22055466 aatattatcgacattgcatctgaaaggcttgactacaattgcaccattcca-gtctatttataagtgcttgaagatgattctagaactaaaataatctag 22055564  T
Q  184 gcctttg 190  Q
    | |||||    
T  22055565 gtctttg 22055571  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 22056567 - 22056646
Alignment:
Q  110 gcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 190  Q
    |||||||| ||||||||||  | || |||| |||||||||| ||||| || ||||||||||||||||||||||||| ||||    
T  22056567 gcttgaatgcaattgcaccttt-taagtctctttataggtgcttgaagatatttctagaactagaataatctaggcatttg 22056646  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 29372004 - 29371902
Alignment:
Q  82 taaatattattgacattgcatcttaaaggcttgaatacaatt-gcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatc 180  Q
    ||||| || |||| |||| |||||||||||||  |||||||| |||||||||||  |||||||||| ||| ||||| |||||| ||  ||| ||||||||    
T  29372004 taaatgttcttgatattgtatcttaaaggcttacatacaatttgcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatc 29371905  T
Q  181 tag 183  Q
    |||    
T  29371904 tag 29371902  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 22056518 - 22056550
Alignment:
Q  48 aggagagaatatcatatggtgaagccttcaata 80  Q
    |||||||||||| ||||||||||||||||||||    
T  22056518 aggagagaatataatatggtgaagccttcaata 22056550  T

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Target: scaffold0272 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 3559 - 3598
Alignment:
Q  84 aatattattgacattgcatcttaaaggcttgaatacaatt 123  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  3559 aatattattgacattgcatctcaaaggtttgaatacaatt 3598  T

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