View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14251_high_15 (Length: 298)
Name: NF14251_high_15
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 31269697 - 31269406
Alignment:
| Q |
1 |
tcactattactaatacacacaaaactctcaacacaaatttctattattttatccttgcaagacaaattctcttacatttttgtgtgtcatgaccatgaag |
100 |
Q |
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| T |
31269697 |
tcactattactaatacacacaaaaatctcaacacaaatttctattattttatccttgcaagacaaattctcttacatttttgtgtgtcatgaccatgaag |
31269598 |
T |
|
| Q |
101 |
aataataagcatcaacaaggtactatagccttaccatatcttaagtttttcaatgctcaactttatttcatcaatttctttggtcatattcttgtatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31269597 |
aataataagcatcaacaaggtactatagccttaccatatcttaagtttttcaatgctcaactttatttcatcaatttctttggtcatattcttgtatttg |
31269498 |
T |
|
| Q |
201 |
gtcttggtttactcattggtatcactctcactttttgtctcaaaaatgtttcattcaatgttcaattccaacaatttcaagatccacctttt |
292 |
Q |
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| T |
31269497 |
gtcttggtttactcattggtatcactctcactttttgtctcaaaaatgtttcattcaattttcaattccaacaatttcaagatccacctttt |
31269406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 286
Target Start/End: Complemental strand, 54479667 - 54479552
Alignment:
| Q |
171 |
tcaatttctttggtcatattcttgtatttggtcttggtttactcattggtatcactctcactttttgtctcaaaaatgtttcattcaatgttcaattcca |
270 |
Q |
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| T |
54479667 |
tcaatttcattactcatattttggtctttggttgtggtttactcattggcatcacactcactttgtgtgtcaaaaatatttcattcaactttcaaatcca |
54479568 |
T |
|
| Q |
271 |
acaatttcaagatcca |
286 |
Q |
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| T |
54479567 |
aaaatcccaagatcca |
54479552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 1139087 - 1139176
Alignment:
| Q |
197 |
tttggtcttggtttactcattggtatcactctcactttttgtctcaaaaatgtttcattcaatgttcaattccaacaatttcaagatcca |
286 |
Q |
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|||||| ||||||||||||| |||||||| |||||||||||| | ||| || |||||||||| ||||| |||| |||| ||||||||| |
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| T |
1139087 |
tttggttttggtttactcatcggtatcacactcactttttgtgttaaagatttttcattcaacattcaaatccataaattccaagatcca |
1139176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 1135886 - 1135968
Alignment:
| Q |
204 |
ttggtttactcattggtatcactctcactttttgtctcaaaaatgtttcattcaatgttcaattccaacaatttcaagatcca |
286 |
Q |
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| T |
1135886 |
ttggtttactcattggtatgacactcactttttgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatcca |
1135968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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