View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14251_high_6 (Length: 475)
Name: NF14251_high_6
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 28788368 - 28788154
Alignment:
| Q |
9 |
aatattaataataatttaaaactcacttgctttgccattgctgcagttgcttccttagttgtggatggtttctcctcaaattttattttagtttgaccct |
108 |
Q |
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| T |
28788368 |
aatattaataataatttaaaactcacttgctttgccattgctgcagttgcttccttagttgtggatggtttctcctcaaattttattttagtttgaccct |
28788269 |
T |
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| Q |
109 |
acaaccacagattacatatttagttacaatttttcagaaatgtaatatcatatacagatgtaccagctaagagctatccccatagatcaaatacaagtgt |
208 |
Q |
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| T |
28788268 |
acaaccacagattacatatatagttacaatttttcagaaatgtaatatcatatacagatgtaccagctaagagctaaccccatagatcaaatacaagtgt |
28788169 |
T |
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| Q |
209 |
tcttagaatgtatca |
223 |
Q |
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| T |
28788168 |
tattagaatgtatca |
28788154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 251 - 460
Target Start/End: Complemental strand, 28774351 - 28774142
Alignment:
| Q |
251 |
tctctatttctccgcatctggtcaccacaatccttcatttgaattaagttttggactatcaaaaaagttacatttcacaaaaaagagcatatgtagtaat |
350 |
Q |
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| T |
28774351 |
tctctatttctccgcatatggtcaccacaatccttcatttgaattaagttttggactatcaaaaaagttacatttcacaaaaaagagcatatgtagtaat |
28774252 |
T |
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| Q |
351 |
agaaaactggttatggtgcacttaatgtaccaaagtcccaatttgatacccgcataacatgcatatcacaagttttaagccatcatttgagacacatttc |
450 |
Q |
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| T |
28774251 |
agaaaactggttatggtgcacttaatgtaccaaagtcccaatttgatacacgcataacatgcatatcacaagttttaagccatcatttgagacacatttc |
28774152 |
T |
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| Q |
451 |
tcattgtata |
460 |
Q |
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|||||||||| |
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| T |
28774151 |
tcattgtata |
28774142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 28774517 - 28774357
Alignment:
| Q |
60 |
tccttagttgtggatggtttctcctcaaattttattttagtttgaccctacaaccacagattacatatttagttacaatttttcagaaatgtaatatcat |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28774517 |
tccttagttgtggatggtttctcctcaaattttattttagtttcagcctacaaccacagattacatatttagttacaattcttcagaaatgtaatatc-- |
28774420 |
T |
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| Q |
160 |
atacag-atgtaccagctaagagctatccccatagatcaaatacaagtgttcttagaatgtat |
221 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28774419 |
atacagcatgtaccagctaagagctatccccatagatcaaatacaagtgttcttagaatgtat |
28774357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 326 - 460
Target Start/End: Complemental strand, 28788102 - 28787968
Alignment:
| Q |
326 |
cacaaaaaagagcatatgtagtaatagaaaactggttatggtgcacttaatgtaccaaagtcccaatttgatacccgcataacatgcatatcacaagttt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
28788102 |
cacaaaaaagagcatatgtagtaatagaaaactggttatggtgcacttaatgtaccaaagtcccaatttgatacacgcacaacatgcatatcacaagttt |
28788003 |
T |
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| Q |
426 |
taagccatcatttgagacacatttctcattgtata |
460 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28788002 |
taagccatcatttgagacacatttctcattgtata |
28787968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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