View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14251_high_7 (Length: 447)
Name: NF14251_high_7
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_high_7 |
 | |
|
| [»] scaffold0018 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0018 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 97 - 383
Target Start/End: Complemental strand, 123643 - 123357
Alignment:
| Q |
97 |
aatgctcgcaaaatattgaatagataatatatttgactaattaaataataaacgtaacataaagtttaattgatactgtagaaattcaactcaatgtggt |
196 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
123643 |
aatgctcgcaaaatattgaagagataatatatttgactaattaaataataaacataacataaagtttaattgatatagtagaaattcaactcaatgtggt |
123544 |
T |
|
| Q |
197 |
tgtggttgtgtttgaagtataaaacagtcttgcgggagataactcccggaactgagctatcgagagatgactcttaaactccataggacgtatcaattgg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123543 |
tgtggttgtgtttgaagtataaaacagtcttgcgggagataactcccgaaactgagcgatcgagagatgactcttaaactccataggacgtatcaattgg |
123444 |
T |
|
| Q |
297 |
acgtatatattagaggtaaaaattgaatattggagtcctaaaagatgctgagggtgcctaaaaataagaaaaatgctcttctcccat |
383 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
123443 |
acatatatattggaggtaaacattgaatattggaatcctaaaagatgttgaggggtcctaaaaataagaaaaatgctcttctcccat |
123357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 134460 - 134362
Alignment:
| Q |
1 |
cttcatagctcatgtcatatcttacttttttaaaatcaaactaggcaaatacccatgctttcgcacgtgtttgtaatatatatagttgttatgttaaat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134460 |
cttcatagctcatgtcatatcttacttttttaaaatcaaaccaggcaaatacccgtgctttcgcacgtgtttgtaatatatatagttgttatgttaaat |
134362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Complemental strand, 123347 - 123319
Alignment:
| Q |
396 |
gctccctcccaactgaaatgatcaaagta |
424 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
123347 |
gctccctcccaactgaaatgatcaaagta |
123319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Complemental strand, 10206094 - 10206063
Alignment:
| Q |
396 |
gctccctcccaactgaaatgatcaaagtaccc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10206094 |
gctccctcccaactgaaatgatcaaagtaccc |
10206063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University