View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14251_high_9 (Length: 425)
Name: NF14251_high_9
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 54725904 - 54726295
Alignment:
| Q |
15 |
catagggatgtgtttgcaatttaaatacgttcatggattatagtggcaccgattatatttatttatgaagtaaatgcatgaaaagacaaaccctgctccc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54725904 |
catagggatgtgtttgcaatttaaatacgttcatggattatagtggcaccggttatatttatttatgaagtaaatgcatgaaaagacaaaccctgctccc |
54726003 |
T |
|
| Q |
115 |
tcctttgcaccagaagtgctaattgagacatgtcattcacctgtatgaaaaacctccttttataatgtttgcagcaaccaaatcaaggtcagcatcttca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54726004 |
tcctttgcaccagaagtgctaattgagacatgtcattcacctgtatgaaaaacctccttttataatgtttgcagcaaccaaatcaaggtcagcatcttca |
54726103 |
T |
|
| Q |
215 |
agtacaatgcaagcatcttttcctcccaattccatttgtaacggaatcatgcctgccttctttgaaattgcaatgccggtatctccaccagtgaagctgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54726104 |
agtacaatgcaagcatcttttcctcccaattccatttgtaacggaatcatgcctgccttctttgaaattgcaatgccggtatctccaccagtgaagctgt |
54726203 |
T |
|
| Q |
315 |
cagatagcaaggttacaagtcagtagagataaaagtggcatatagtcatatactatgacagcatcatattgattgatatatagtcaccttat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54726204 |
cagatagcaaggttacaagtcagtagagataaaagtggcatatagtcatatactatgagagcatcatattgattgatatatagtcaccttat |
54726295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 309
Target Start/End: Complemental strand, 3008634 - 3008478
Alignment:
| Q |
153 |
acctgtatgaaaaacctccttttataatgtttgcagcaaccaaatcaaggtcagcatcttcaagtacaatgcaagcatcttttcctcccaattccatttg |
252 |
Q |
| |
|
|||||||||| || |||||||| | |||||| ||||| |||||||| | ||||||||||||||| |||||||||||||||||||| || | |||||||| |
|
|
| T |
3008634 |
acctgtatgagaaccctcctttcacaatgttagcagctaccaaatccaagtcagcatcttcaagaacaatgcaagcatcttttccaccaagctccatttg |
3008535 |
T |
|
| Q |
253 |
taacggaatcatgcctgccttctttgaaattgcaatgccggtatctccaccagtgaa |
309 |
Q |
| |
|
| |||| ||| | | ||||||||| ||||| || || || |||||||||||||| |
|
|
| T |
3008534 |
aagaggaaccattgcagacttctttgatattgctattccagtgtctccaccagtgaa |
3008478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University