View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14251_low_12 (Length: 382)
Name: NF14251_low_12
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 37896963 - 37897339
Alignment:
| Q |
1 |
attatcatcataggttgttttgtgtgttaactttggaacaaggtgattatagtctttcagatttttgggatggtgattggctgaaagatggttgaaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37896963 |
attatcatcataggttgttttgtgtgttaactttggaacaagatgattatagtctttaagatttttgggatggtgattggctgaaagatggttgaaattc |
37897062 |
T |
|
| Q |
101 |
gccgaggtttcgatgatggtaaaggtgacagaatctttttgagtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagag |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37897063 |
gccgaggtttcgatgacggtaaaggtgacagaatctttttgagtgtagaggataaagggtttgtggggtggtggtggagagattagatttccagcaagag |
37897162 |
T |
|
| Q |
201 |
ggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37897163 |
ggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattg |
37897262 |
T |
|
| Q |
301 |
gcgtctaacatagattggaccagctaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgttgatgatg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
37897263 |
gcgtctaacatagattggaccagctaaaggcaagtcaaggaatgtgagaggaagagaaattgttgctgtagatgatg |
37897339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 37958227 - 37957858
Alignment:
| Q |
1 |
attatcatcataggttgttttgtgtgttaactttggaacaaggtgattatagtctttcagatttttgggatggtgattggctgaaagatggttgaaattc |
100 |
Q |
| |
|
|||| ||||||||||||||||| | |||| |||||| ||| | |||||||||||| ||||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
37958227 |
attaccatcataggttgttttgcggcttaattttggactaagataattatagtctttaagatttttggggtggtgattggttgatagatggttgaaatct |
37958128 |
T |
|
| Q |
101 |
gccgaggtttcgatgatggtaaaggtgacagaatctttttgagtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagag |
200 |
Q |
| |
|
||||||| ||||| ||||||||| | |||||| || ||||||||| | || ||||| |||||||||||| |||| ||| | ||||||||||| |||| |
|
|
| T |
37958127 |
gccgaggattcgacgatggtaaaagcgacagagtcattttgagtgcaaagaataaaaggtttgtggggttgtggaggacattgaagatttccagctagag |
37958028 |
T |
|
| Q |
201 |
ggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
37958027 |
ggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaatgtggaaagtgatagaagaataa |
37957928 |
T |
|
| Q |
301 |
gcgtctaacatagattggaccagctaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgtt |
370 |
Q |
| |
|
|||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957927 |
gcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgtt |
37957858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 370
Target Start/End: Complemental strand, 37952489 - 37952123
Alignment:
| Q |
4 |
atcatcataggttgttttgtgtgttaactttggaacaaggtgattatagtctttcagatttttgggatggtgattggctgaaagatggttgaaattcgcc |
103 |
Q |
| |
|
||||||| | |||||||| | ||||| |||||||||||||||||| |||||| ||||||||||| || || |||| ||| |||||||||||||| || |
|
|
| T |
37952489 |
atcatcaaatgttgttttttctgttagttttggaacaaggtgattaaagtcttggagatttttggggtgttggttggttgagagatggttgaaatttgct |
37952390 |
T |
|
| Q |
104 |
gaggtttcgatgatggtaaaggtgacagaatctttttgagtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagaggga |
203 |
Q |
| |
|
|| | |||||||| |||||| ||||| || || ||||||||| | || ||||| ||||||||||||||| | ||| || ||||||||||||||||||| |
|
|
| T |
37952389 |
gaagattcgatgacggtaaaagtgacggagtcattttgagtgcaaagaataaaaggtttgtggggtggtagaggacagtgaagatttccagcaagaggga |
37952290 |
T |
|
| Q |
204 |
agaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
37952289 |
agaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttagaaaaatgggttgttgaatgaggaaagtgatagaagaataagcg |
37952190 |
T |
|
| Q |
304 |
tctaacatagattggaccagctaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgtt |
370 |
Q |
| |
|
| |||||||| |||||| || ||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
37952189 |
ttcaacatagactggacctgcaaaaggcaagtcgaggaatgtgagaggaagaaaagttgttgttgtt |
37952123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 143 - 368
Target Start/End: Original strand, 28166759 - 28166985
Alignment:
| Q |
143 |
gtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagagggaagaaatgttgaagagtaagagaaagaga-gtgtttgaga |
241 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
28166759 |
gtgtagagaataaacggtttttgtcgtggtggtagagaaatgagatttccagcaagagggaagaaatgttgaagagtaagagaaagaaatttttttgaga |
28166858 |
T |
|
| Q |
242 |
gatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaagtcaagga |
341 |
Q |
| |
|
|| ||||||||||||||||||||||| | ||||||| || ||| | | ||| ||| | | ||| |||| ||||||||| ||| ||||||||| | |
|
|
| T |
28166859 |
gaaggaagtgttgttttgcaaaaatggttggttgaataagcaaaagggtcgaaaaatattcatttaatgtagactggaccagcaaaatgcaagtcaaaaa |
28166958 |
T |
|
| Q |
342 |
atgtgagaggaagagaagttgttgttg |
368 |
Q |
| |
|
|||||| ||||||| |||||||||||| |
|
|
| T |
28166959 |
atgtgaaaggaagataagttgttgttg |
28166985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 143 - 368
Target Start/End: Original strand, 44905604 - 44905830
Alignment:
| Q |
143 |
gtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagagggaagaaatgttgaagagtaagagaaagaga-gtgtttgaga |
241 |
Q |
| |
|
|||||||| ||||| ||||| || | |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
44905604 |
gtgtagagaataaacggtttttgtgagggtggtagagaaatgagatttccggcaagagggaagaaatgttgaagagtaagagaaagagatttttttgagc |
44905703 |
T |
|
| Q |
242 |
gatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaagtcaagga |
341 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||| || ||| | | ||||||| || | |||| |||| |||| |||| ||| || |||||| | |
|
|
| T |
44905704 |
gatggaagtgttgttttgcaaaaatggttggttaaataagcaaaagggtcgaagaatatgcatttaacgtagactggatcagcaaaatgctagtcaaaaa |
44905803 |
T |
|
| Q |
342 |
atgtgagaggaagagaagttgttgttg |
368 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
44905804 |
atgtgagaggaagataagttgttgttg |
44905830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 11528395 - 11528744
Alignment:
| Q |
18 |
ttttgtgtgttaactttggaacaaggtgattatagtctttcagatttttgggatggtgattggctgaaagatggttgaaattcgccgaggtttcgatgat |
117 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| ||||| |||||||| | | || |||| || ||||||||||||| || |||| ||||||||| |
|
|
| T |
11528395 |
ttttgtttgttaatgttggaacaaggtgattagtttctttgagatttttcaggggttgtttggtcgagagatggttgaaatctgctgaggattcgatgat |
11528494 |
T |
|
| Q |
118 |
ggtaaaggtgacagaatctttttgagtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagagggaagaaatgttgaaga |
217 |
Q |
| |
|
|||||||| |||||| |||| || |||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11528495 |
ggtaaaggcgacagagtcttcttcggtgtagagaataaaaggtttttgtggtggtggtggagaaatgagatttccagcaagagggaagaaatgttgaaga |
11528594 |
T |
|
| Q |
218 |
gtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattg |
317 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||||||||||| | ||||||| || ||| ||||||||||| ||||| |||| |||| || |
|
|
| T |
11528595 |
gtaagagaaagagattttttgagagatggtagtgttgttttgcaaaaatggttggttgaataagcaaaaggatagaagaataggcgtttaacgtagactg |
11528694 |
T |
|
| Q |
318 |
gaccagctaaaggcaagtcaaggaatgtgagaggaagagaagttgttgtt |
367 |
Q |
| |
|
|||| || ||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11528695 |
gacctgcaaaatgcaagtcgaggaatgtgagaggaagagaagttgttgtt |
11528744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 39712786 - 39713137
Alignment:
| Q |
17 |
gttttgtgtgttaactttggaacaaggtgattatagtctttcagatttttgggatggtgattggctgaaagatggttgaaattcgccgaggtttcgatga |
116 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| ||||| |||||||| | ||||| ||| ||| ||||||||||||| | ||||| ||| | || |
|
|
| T |
39712786 |
gttttgtgtgttaatattggagcaaggtgattattttctttgagatttttcaggtggtgtttgtttgagagatggttgaaatctgacgaggattcaacga |
39712885 |
T |
|
| Q |
117 |
tggtaaaggtgacagaatctttttgagtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagagggaagaaatgttgaag |
216 |
Q |
| |
|
|||| ||| ||| || |||| || ||| || | ||||| ||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39712886 |
tggtgaagaagacggagtcttcttcggtgcagcgaataaaaggtttttgtggtggtggtggagaaatgagatttccagcaagagggaaaaaatgttgaag |
39712985 |
T |
|
| Q |
217 |
agtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagatt |
316 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||| |||| || | |||||| |
|
|
| T |
39712986 |
agcacatgaaagagactgtttgagagatggaagtgttgttttgcaaaaatggttggtagaatgaggaaaaggatagaagaataagcgtttagcgtagatt |
39713085 |
T |
|
| Q |
317 |
ggaccagctaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttg |
368 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
39713086 |
ggaccagcaaaatgcaagtcaagaaatgtgagaggaagataagtagttgttg |
39713137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 267
Target Start/End: Complemental strand, 3149757 - 3149633
Alignment:
| Q |
143 |
gtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagagggaagaaatgttgaagagtaagagaaagagagtgtttgagag |
242 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
3149757 |
gtgtagagaataaatggtttttgtcgtggtagtagagaaatgagatttccagcaagagggaagaaatgttgaagagtaagagaaagagatttttcgagag |
3149658 |
T |
|
| Q |
243 |
atggaagtgttgttttgcaaaaatg |
267 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3149657 |
atggaagtgttgttttgcaaaaatg |
3149633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 24549733 - 24549693
Alignment:
| Q |
184 |
gagatttccagcaagagggaagaaatgttgaagagtaagag |
224 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
24549733 |
gagatttccaacaagagggaagaaatattgaagagaaagag |
24549693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 170 - 370
Target Start/End: Original strand, 34539249 - 34539449
Alignment:
| Q |
170 |
ggtggtggagagatgagatttccagcaagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgag |
269 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
34539249 |
ggtggtagagaaatgagatttccggcaagagggaagaaatgttgaagagtaagagaaagagattttttgagagatggaagtgttgttttgcgaaaatggt |
34539348 |
T |
|
| Q |
270 |
ttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgt |
369 |
Q |
| |
|
| ||||||| || ||| | | ||||||| || | ||| |||||||||||||| ||| ||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
34539349 |
tggttgaataagcaaaagggtcgaagaatatgcatttaatgtagattggaccagcaaaatgcaagtcaaaaaatatgagaggaagataagttgttgttgt |
34539448 |
T |
|
| Q |
370 |
t |
370 |
Q |
| |
|
| |
|
|
| T |
34539449 |
t |
34539449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 368
Target Start/End: Complemental strand, 11148973 - 11148747
Alignment:
| Q |
143 |
gtgtagaggataaagggtttgtggggtggtggtggagagatgagatttccagcaagagggaagaaatgttgaagagtaagagaaagaga-gtgtttgaga |
241 |
Q |
| |
|
|||||||| ||||| | ||| || |||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
11148973 |
gtgtagagaataaacgatttttgtcgtggtggtagagaaatgagatttccagcaaaagggaagaaatgttgaacagtaagagaaagagatttttttgaga |
11148874 |
T |
|
| Q |
242 |
gatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaagtcaagga |
341 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| || ||| | | ||||||| || | |||| |||| ||||||| | ||| ||||||||| | |
|
|
| T |
11148873 |
gatggaagtgttgttttgcaaaaatggttggttgaataagtaaaagggtcgaagaatatgcatttaacgtagactggaccaacaaaatgcaagtcaaaaa |
11148774 |
T |
|
| Q |
342 |
atgtgagaggaagagaagttgttgttg |
368 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
11148773 |
atgtgagaggaagataagttgttgttg |
11148747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 182 - 370
Target Start/End: Original strand, 38757779 - 38757968
Alignment:
| Q |
182 |
atgagatttccagcaagagggaagaaatgttgaagagtaagagaaagaga-gtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatga |
280 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||| | |
|
|
| T |
38757779 |
atgagatttccggcaagagggaagaaatgttgaagagtaagagaaagagatttttttgagagatggaagtgttgttttgcaaaaatggttggttgaataa |
38757878 |
T |
|
| Q |
281 |
ggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgtt |
370 |
Q |
| |
|
| ||| | | ||||||| || | |||| |||| ||||||| | ||| ||||| ||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
38757879 |
gcaaaagggtcgaagaatatgcatttaacgtagactggaccaacaaaatgcaaggcaaaaaatgttagaggaagataagttgttgttgtt |
38757968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University