View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14251_low_15 (Length: 349)

Name: NF14251_low_15
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14251_low_15
NF14251_low_15
[»] chr5 (20 HSPs)
chr5 (148-349)||(43115350-43115551)
chr5 (1-121)||(43115192-43115312)
chr5 (184-323)||(3114091-3114231)
chr5 (157-344)||(27336711-27336899)
chr5 (160-349)||(35455969-35456159)
chr5 (157-323)||(33691956-33692123)
chr5 (157-323)||(35310487-35310654)
chr5 (211-349)||(37873593-37873732)
chr5 (157-349)||(32269698-32269891)
chr5 (160-320)||(43129576-43129737)
chr5 (157-323)||(13166811-13166978)
chr5 (267-323)||(14423717-14423773)
chr5 (182-329)||(9829280-9829426)
chr5 (233-323)||(25663009-25663100)
chr5 (262-349)||(34335350-34335437)
chr5 (278-344)||(430620-430686)
chr5 (259-349)||(42921710-42921800)
chr5 (262-323)||(38875677-38875738)
chr5 (196-323)||(32230447-32230575)
chr5 (160-243)||(433412-433495)
[»] chr4 (23 HSPs)
chr4 (157-323)||(55933363-55933530)
chr4 (157-344)||(53619604-53619792)
chr4 (157-323)||(50000826-50000994)
chr4 (157-323)||(31847126-31847293)
chr4 (160-323)||(132424-132590)
chr4 (157-349)||(26521501-26521694)
chr4 (214-323)||(30940697-30940806)
chr4 (218-343)||(50462908-50463034)
chr4 (199-323)||(16957581-16957706)
chr4 (157-349)||(56462008-56462200)
chr4 (157-320)||(25504337-25504499)
chr4 (157-349)||(12918273-12918466)
chr4 (172-299)||(53170570-53170698)
chr4 (161-235)||(3330078-3330152)
chr4 (212-323)||(48656866-48656978)
chr4 (262-349)||(600699-600786)
chr4 (260-331)||(45760839-45760910)
chr4 (1-35)||(1736845-1736879)
chr4 (277-323)||(6865842-6865888)
chr4 (283-344)||(3330014-3330075)
chr4 (283-347)||(24719949-24720013)
chr4 (293-349)||(38535607-38535663)
chr4 (201-323)||(46440833-46440957)
[»] chr2 (17 HSPs)
chr2 (157-323)||(5532458-5532625)
chr2 (172-323)||(9685331-9685483)
chr2 (172-323)||(4412982-4413134)
chr2 (199-323)||(32029030-32029154)
chr2 (157-323)||(17344677-17344844)
chr2 (157-323)||(28225039-28225206)
chr2 (157-326)||(23484839-23485009)
chr2 (222-323)||(41867874-41867976)
chr2 (181-323)||(19161708-19161851)
chr2 (157-227)||(9674980-9675050)
chr2 (157-292)||(44686490-44686625)
chr2 (157-320)||(18744855-18745019)
chr2 (267-349)||(33612559-33612641)
chr2 (254-331)||(3968408-3968485)
chr2 (157-249)||(3825841-3825933)
chr2 (262-349)||(2888529-2888616)
chr2 (283-323)||(20142753-20142793)
[»] chr1 (17 HSPs)
chr1 (157-349)||(34644579-34644772)
chr1 (157-323)||(2764518-2764685)
chr1 (157-349)||(29169695-29169887)
chr1 (172-323)||(28041043-28041195)
chr1 (172-349)||(45659563-45659742)
chr1 (172-323)||(19035486-19035638)
chr1 (157-349)||(4861890-4862083)
chr1 (266-349)||(38731622-38731705)
chr1 (253-323)||(36486925-36486995)
chr1 (157-310)||(50161318-50161472)
chr1 (262-323)||(21473042-21473103)
chr1 (262-323)||(22346934-22346995)
chr1 (211-331)||(16500065-16500186)
chr1 (157-293)||(37932119-37932255)
chr1 (196-323)||(31737263-31737391)
chr1 (174-249)||(25375751-25375826)
chr1 (184-323)||(42919899-42920038)
[»] chr6 (17 HSPs)
chr6 (157-323)||(33220612-33220779)
chr6 (160-344)||(17249209-17249394)
chr6 (157-349)||(4206497-4206690)
chr6 (157-323)||(357618-357785)
chr6 (169-323)||(34415475-34415630)
chr6 (169-323)||(28008900-28009058)
chr6 (157-323)||(34304535-34304702)
chr6 (157-299)||(12401394-12401537)
chr6 (157-343)||(29337984-29338167)
chr6 (157-323)||(28543414-28543581)
chr6 (267-349)||(4165934-4166016)
chr6 (157-278)||(32115773-32115895)
chr6 (173-323)||(45594-45745)
chr6 (211-317)||(34168913-34169020)
chr6 (157-349)||(959593-959786)
chr6 (180-321)||(34554201-34554343)
chr6 (250-299)||(6225135-6225184)
[»] chr8 (15 HSPs)
chr8 (157-344)||(39434685-39434873)
chr8 (157-349)||(25021715-25021908)
chr8 (180-323)||(38815333-38815477)
chr8 (164-349)||(8619827-8620013)
chr8 (157-349)||(24125041-24125234)
chr8 (157-320)||(500269-500433)
chr8 (157-323)||(35739888-35740054)
chr8 (163-337)||(42922034-42922209)
chr8 (180-349)||(3187982-3188152)
chr8 (208-349)||(36004135-36004277)
chr8 (157-275)||(11611149-11611264)
chr8 (157-320)||(10189585-10189749)
chr8 (253-349)||(28196205-28196301)
chr8 (214-323)||(6592614-6592724)
chr8 (238-323)||(6618323-6618409)
[»] chr3 (18 HSPs)
chr3 (157-349)||(53785722-53785915)
chr3 (172-323)||(44198806-44198958)
chr3 (157-316)||(13582555-13582715)
chr3 (157-323)||(39583130-39583297)
chr3 (262-349)||(52741519-52741606)
chr3 (180-349)||(38146069-38146239)
chr3 (157-349)||(7900871-7901064)
chr3 (157-323)||(49018002-49018169)
chr3 (211-344)||(26772776-26772910)
chr3 (259-319)||(26856766-26856826)
chr3 (157-328)||(46940671-46940843)
chr3 (260-323)||(38670885-38670948)
chr3 (199-323)||(3443255-3443380)
chr3 (262-323)||(32546834-32546895)
chr3 (213-323)||(5338682-5338796)
chr3 (267-323)||(52411903-52411959)
chr3 (254-349)||(37132998-37133093)
chr3 (157-249)||(35236320-35236412)
[»] chr7 (24 HSPs)
chr7 (157-331)||(28517188-28517363)
chr7 (157-323)||(4501297-4501464)
chr7 (157-323)||(32584640-32584807)
chr7 (172-349)||(43856887-43857065)
chr7 (172-349)||(19277306-19277484)
chr7 (259-323)||(30216062-30216126)
chr7 (183-349)||(21326765-21326932)
chr7 (199-349)||(27521484-27521635)
chr7 (172-328)||(3676673-3676831)
chr7 (157-349)||(5825286-5825477)
chr7 (157-323)||(45613743-45613910)
chr7 (214-295)||(1249653-1249735)
chr7 (214-323)||(24527628-24527738)
chr7 (222-323)||(982988-983090)
chr7 (237-349)||(38839337-38839454)
chr7 (234-323)||(10905157-10905246)
chr7 (215-323)||(34772820-34772927)
chr7 (180-323)||(22198025-22198169)
chr7 (180-323)||(22239652-22239796)
chr7 (283-323)||(48539220-48539260)
chr7 (157-236)||(9266174-9266252)
chr7 (262-295)||(34067869-34067902)
chr7 (276-349)||(40726501-40726574)
chr7 (255-299)||(23793075-23793119)
[»] scaffold0490 (1 HSPs)
scaffold0490 (172-323)||(6373-6524)
[»] scaffold0186 (1 HSPs)
scaffold0186 (181-349)||(10373-10546)
[»] scaffold0031 (1 HSPs)
scaffold0031 (231-347)||(49426-49543)
[»] scaffold1768 (1 HSPs)
scaffold1768 (157-323)||(85-252)
[»] scaffold0148 (1 HSPs)
scaffold0148 (171-349)||(33263-33441)
[»] scaffold0009 (1 HSPs)
scaffold0009 (214-323)||(103145-103254)
[»] scaffold0470 (1 HSPs)
scaffold0470 (238-323)||(7641-7727)
[»] scaffold0224 (1 HSPs)
scaffold0224 (184-323)||(18293-18432)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 148 - 349
Target Start/End: Original strand, 43115350 - 43115551
Alignment:
Q  148 cttaaaaagaacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgc 247  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  43115350 cttaaaaagaacatgcatgtatggatttgatcggggtttcaccactcatgggattagaggtcggggcttttacggtaggatagacagccctaaaagttgc 43115449  T
Q  248 gtaaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttg 347  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43115450 gtaaataaagcggtcaaatatgagaaagcgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagagattg 43115549  T
Q  348 tt 349  Q
    ||    
T  43115550 tt 43115551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 43115192 - 43115312
Alignment:
Q  1 tctttgttattccttttgtgtgaagtcaaccatatgaagagtgaatttaaatggcgacgtaagtggacgatgagattggcagctagattagtcggtccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43115192 tctttgttattccttttgtgtgaagtcaaccatatgaagagtgaatttaaatggcgacgtaagcggacgatgagattggcagctagattagtcggtccat 43115291  T
Q  101 agactgaatatcaagttttaa 121  Q
    ||| |||||||||||||||||    
T  43115292 agattgaatatcaagttttaa 43115312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 184 - 323
Target Start/End: Original strand, 3114091 - 3114231
Alignment:
Q  184 tttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttt 282  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| | ||| |||| || |||| |||||||||  ||||     
T  3114091 tttcaccactcatgggattaggggtcggggcttttacggtaggacaggcagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 3114190  T
Q  283 tgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||| |||||||| ||| ||| |||||| |||||||||||    
T  3114191 tgacagtcaacatgtttttataccatttgtttttgacactt 3114231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 157 - 344
Target Start/End: Complemental strand, 27336899 - 27336711
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||| ||||||||||||||  || | ||||||||  ||||||||||  ||||| || |||||||||||||||||| ||  ||    
T  27336899 aacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacaataggacagacagccctaaaagttgcgtcaagcaa 27336800  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagagg 344  Q
    || ||||||| ||||||||  ||||| ||||||||||||| |||| ||| |||||||||||||||||| || |||| || || ||||||    
T  27336799 agtggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatttgcttttgacacttgtggcttcctagcatcagagg 27336711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 349
Target Start/End: Complemental strand, 35456159 - 35455969
Alignment:
Q  160 atgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taaagc 258  Q
    |||||||| || |||||||||||||||  |||||| |  ||||||||||| || ||||||||||||| |||| ||||| |||||||| || || ||||      
T  35456159 atgcatgtgtggacttgaccggggttttgccactcgtaggattaggggtccggccttttacggtagggtaggtagcccaaaaagttgtgttaagtaaaat 35456060  T
Q  259 ggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    ||||||| ||||||||| ||||| | |||||||||||||||| ||| | ||||||||||||| || || |||| || ||||||||| ||||    
T  35456059 ggtcaaacatgagaaagcgtgttctaacaatcaacatgcttttataccttttgcttttgacaattttggcttcctagcaccagaggatgtt 35455969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 33691956 - 33692123
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||| | ||||||||||||  || | ||||||||| ||||||||||||||||| |||||| |||||||| ||||| ||  ||    
T  33691956 aacatgcatgtgtggacttgactgaggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacaggcaggcctaaaagctgcgtcaagcaa 33692055  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| |||| |||  ||||| ||||||||||||||||||  || ||||||||||||||||||    
T  33692056 agtggccaaacatgacaaaacgtgttatgacaatcaacatgcttttgtaccatttgcttttgacactt 33692123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 35310654 - 35310487
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||  ||||||||||||||  || | ||||||||| ||||||||||||||||| || || ||||||||| ||||| ||  ||    
T  35310654 aacatgcatgtgtggacttgattggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacaaccctaaaagatgcgtcaagcaa 35310555  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| |||||||||  |||| |||||||||||||||||| ||| ||| ||||||||||||||    
T  35310554 agtggccaaacatgagaaagcatgttctgacaatcaacatgcttttataccatctgcttttgacactt 35310487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 211 - 349
Target Start/End: Original strand, 37873593 - 37873732
Alignment:
Q  211 gggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatt 309  Q
    ||||||||||||||||| || |||| ||||||||||||| ||  |||| || |||| ||||||||| ||||| |||||||||||||| ||| ||| ||||    
T  37873593 gggcttttacggtaggacagacagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatt 37873692  T
Q  310 tgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||||||||||||| || |||| || ||||||||||||||    
T  37873693 tgcttttgacacttttggcttcctagcaccagaggttgtt 37873732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 32269698 - 32269891
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| |  ||||||| ||||||||||||||  ||  |||||| ||| || |||||| ||||||| | ||| ||||||||| ||| | ||  ||    
T  32269698 aacatgcatgtgtagacttgactggggtttcaccacttctggaattaggtgtcgggccttttatggtaggacatgcaaccctaaaagctgcatcaaccaa 32269797  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || ||||||| ||||||||||||||| |||||||||||| ||||| ||| ||||||||||||| ||||  || ||| || ||| ||||||||||    
T  32269798 agtggtcaaacatgagaaagtgtgttctgacaatcaacacgcttttataccatttgcttttgatactttcgatttcctagcactagaggttgtt 32269891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 320
Target Start/End: Complemental strand, 43129737 - 43129576
Alignment:
Q  160 atgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagc 258  Q
    |||||||| |||| ||||| ||||||||||||||  |  ||||||||||| |  |||||||||| ||| |  ||| |||||||| ||||| ||  ||||     
T  43129737 atgcatgtgtgaaattgactggggtttcaccacttgttggattaggggtcggaacttttacggttggacattcagtcctaaaagatgcgtcaagcaaagt 43129638  T
Q  259 ggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgaca 320  Q
    ||||||| ||||||||  ||||| |||||||||||||| |||  || |||||||||||||||    
T  43129637 ggtcaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttgaca 43129576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 13166811 - 13166978
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatg-agattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-a 254  Q
    ||||||||||| || ||||||| ||| ||||||||||  || |  ||| |||| |||||||||||||| ||| || || ||||||||  ||||| ||  |    
T  13166811 aacatgcatgtgtggacttgactggg-tttcaccacttgtggattttatgggttagggcttttacggtgggacagacaaccctaaaatctgcgtcaagca 13166909  T
Q  255 aagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||| ||  ||| ||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  13166910 aagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactt 13166978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 14423773 - 14423717
Alignment:
Q  267 atgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  14423773 atgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactt 14423717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 9829280 - 9829426
Alignment:
Q  182 ggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaataaagcggtcaaatatgagaaagtgtgtt 281  Q
    ||||||||||||  | |||||||| ||| |  ||||||  ||| |||||  |||||||||||||||||||  |||| || | || |||| ||| ||||||    
T  9829280 ggtttcaccacttgtaagattaggagtcggatcttttatagtaagatagatagccctaaaagttgcgtaagcaaagtgg-ctaacatgataaaatgtgtt 9829378  T
Q  282 ttgacaatcaacatgctttcatagcatttgcttttgacacttctgact 329  Q
    ||||||||||||||||||| ||| |||||   |||||||||| |||||    
T  9829379 ttgacaatcaacatgcttttataccatttatatttgacacttttgact 9829426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 25663009 - 25663100
Alignment:
Q  233 agccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||||||||| ||| | ||| |||| || |||| ||||||||| ||||| ||| |||||||||| ||| ||| ||||||||||||||||||    
T  25663009 agccctaaaagctgcatcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacactt 25663100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 34335437 - 34335350
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||| ||||||||| ||||  |||||||||||||||||| ||| |||||| |||||||||||  |||||  | |||||||||| ||||    
T  34335437 caaacatgagaaagcgtgtcctgacaatcaacatgcttttataccatttgtttttgacactttcgactttctgacaccagaggctgtt 34335350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 430686 - 430620
Alignment:
Q  278 tgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagagg 344  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||| || |||| || || ||||||    
T  430686 tgttctgacaatcaacatgcttttataccatttgcttttgacacttttgtcttcatagcatcagagg 430620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 349
Target Start/End: Complemental strand, 42921800 - 42921710
Alignment:
Q  259 ggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    ||||||| | ||||||  ||||| |||||||||||||||||| ||| ||||||||| ||||||||  |  ||| || ||||||||||||||    
T  42921800 ggtcaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcctagcaccagaggttgtt 42921710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 38875738 - 38875677
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||| ||||||||||||||| |||||||||||||| |||  || |||||| |||||||||||    
T  38875738 caaacatgagaaagtgtgttctgacaatcaacatgtttttgtaccatttgtttttgacactt 38875677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 32230447 - 32230575
Alignment:
Q  196 tgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaaca 294  Q
    ||||||||||||||||  ||||||||||| || | | |||  |||||||||||| ||  |||| |  |||| |||||||| |||||| ||||||||||||    
T  32230447 tgagattaggggtcagaacttttacggtaagacaagtagctttaaaagttgcgtcaagcaaagtgaccaaacatgagaaaatgtgttctgacaatcaaca 32230546  T
Q  295 tgctttcatagcatttgcttttgacactt 323  Q
     ||||| ||| ||| ||| || |||||||    
T  32230547 agcttttataccatctgcgttcgacactt 32230575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 433495 - 433412
Alignment:
Q  160 atgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaag 243  Q
    |||||||| || |||||||||||||||||||||   || | ||| ||||  |||||||||||||||||||| || || ||||||    
T  433495 atgcatgtgtggacttgaccggggtttcaccacctgtgggtttaagggtaggggcttttacggtaggatagacaaccttaaaag 433412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 55933363 - 55933530
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    |||||| |||| |||| || |||||||||||||| ||  || | ||| ||||||||||||||||||||||| || |||||||||||||||||| ||| ||    
T  55933363 aacatgaatgtctgaatttaaccggggtttcaccccttgtgggtttaagggtcagggcttttacggtaggacagtcagccctaaaagttgcgtcaaacaa 55933462  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| |||||||||| |||| | |||||||||||||||| ||| ||||||||||||||||||    
T  55933463 agtggccaaacatgagaaagtttgttctaacaatcaacatgcttttataccatttgcttttgacactt 55933530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 344
Target Start/End: Complemental strand, 53619792 - 53619604
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || ||||||| ||||||||||||||  || | |||| |||  |||||||||| |||||| ||||| ||||||||| ||||| ||  ||    
T  53619792 aacatgcatgtgtggacttgactggggtttcaccacttgtgggtttagaggtgggggcttttacagtaggacaggcaaccctaaaagctgcgtcaagcaa 53619693  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagagg 344  Q
    || || |||| ||||||||  ||||| |||||||||||||||||| ||| |||||| ||||||||||| ||||||| || || ||||||    
T  53619692 agtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttcctagcatcagagg 53619604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 50000826 - 50000994
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||| ||||||||||||||  || | | ||||||  ||||||||||||||||| || |||| ||||||| ||||| ||  ||    
T  50000826 aacatgcatgtgtggacttgactggggtttcaccacttgtgggttaaggggtgggggcttttacggtaggacagacagctctaaaagctgcgtcaagcaa 50000925  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgc-tttcatagcatttgcttttgacactt 323  Q
    || ||||||| ||||||||| ||||| ||||||||||||||| ||| |||  |||||||||||||||||    
T  50000926 agtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttaatacaatttgcttttgacactt 50000994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 31847293 - 31847126
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || |||||||  |||||||||||||  || | ||||||||  |||||||||| |||||| ||||||||||||||| ||||| ||  ||    
T  31847293 aacatgcatgtgtggacttgactagggtttcaccacttgtgggtttaggggtgggggcttttacagtaggacaggcagccctaaaagctgcgtcaagcaa 31847194  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || ||||||| ||||||||   |||| ||||| |||||||| |||  || ||||||||||||||||||    
T  31847193 agtggtcaaacatgagaaaccatgttctgacagtcaacatgtttttttaccatttgcttttgacactt 31847126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 323
Target Start/End: Complemental strand, 132590 - 132424
Alignment:
Q  160 atgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacg--gtaggataggcagccctaaaagttgcgt-aaataaa 256  Q
    |||||||| |||||||||| ||||||||||||||  |  ||||||||||| || ||||||||  |||||| ||||||||||||||| ||||| ||  |||    
T  132590 atgcatgtgtgaacttgactggggtttcaccacttgttggattaggggtcgggacttttacggtgtaggacaggcagccctaaaagctgcgtcaagcaaa 132491  T
Q  257 gcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
      ||  ||| ||||||||  ||||| |||||||||||||||||| ||| |||||| |||| ||||||    
T  132490 atggcaaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgttttttacactt 132424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 349
Target Start/End: Complemental strand, 26521694 - 26521501
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    |||||||||||||| ||||||| || |||||| ||||  || |||||||||||||  |||||| ||||||| |  || ||||||||||||||| ||| ||    
T  26521694 aacatgcatgtatggacttgactggagtttcatcacttgtgggattaggggtcagaccttttatggtaggacaaacaaccctaaaagttgcgtcaaacaa 26521595  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || ||  ||| |||| |||  ||||| |||||||||||||||||| ||| ||| ||||||  |||||| ||  ||| || ||||||||| ||||    
T  26521594 agtggctaaacatgaaaaaacgtgttatgacaatcaacatgcttttatatcatatgctttcaacacttttggtttcctagcaccagaggctgtt 26521501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 323
Target Start/End: Original strand, 30940697 - 30940806
Alignment:
Q  214 cttttacggtaggataggcagccctaaaagttgcgtaaa-taaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgc 312  Q
    |||||||  ||||| || || ||||||||||||||| || ||||| ||||||| ||||||||| ||||| |||||||||||||||||| ||| || ||||    
T  30940697 cttttaccataggacagacaaccctaaaagttgcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacca-ttgc 30940795  T
Q  313 ttttgacactt 323  Q
    |||||||||||    
T  30940796 ttttgacactt 30940806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 50462908 - 50463034
Alignment:
Q  218 tacggtaggataggcagccctaaaagttgcgtaaataaagcggtc-aaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgctttt 316  Q
    |||||||||| || ||||| |||||||||||| ||  |||  | | ||| |||||||||||| ||  ||||||||||||||||||||| |||||||||||    
T  50462908 tacggtaggacagacagccttaaaagttgcgtcaagcaagatgaccaaacatgagaaagtgtcttccgacaatcaacatgctttcataccatttgctttt 50463007  T
Q  317 gacacttctgacttcgtaacaccagag 343  Q
    ||||||| ||| ||| | |||||||||    
T  50463008 gacacttttgatttccttacaccagag 50463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 16957706 - 16957581
Alignment:
Q  199 gattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgc 297  Q
    ||||||||||| || || |||| ||||||||||||| ||||||||||||||| |  |||  |  |||| ||||||||||||| | ||| |||||||||||    
T  16957706 gattaggggtcgggcctcttacagtaggataggcagtcctaaaagttgcgtagagcaaaatgaccaaacatgagaaagtgtgctctgataatcaacatgc 16957607  T
Q  298 tttcatagcatttgcttttgacactt 323  Q
    ||  ||| ||||||||||||||||||    
T  16957606 ttatataccatttgcttttgacactt 16957581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 56462008 - 56462200
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||| | |||||||||| |  |  |||||||||||  | |||||||||| | |||| |  ||||||||||||||| ||| ||    
T  56462008 aacatgcatgtgtggacttgactgaggtttcaccatttgttggattaggggtcgagacttttacggttgtatagaccaccctaaaagttgcgtcaaacaa 56462107  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || || |||| |||| |||| ||||| |||||||||||||| ||| ||| |||||| ||| ||||||| ||  ||| || ||||||||||||||    
T  56462108 agtgg-caaacatgataaagcgtgttctgacaatcaacatgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgtt 56462200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 25504499 - 25504337
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaataaa 256  Q
    |||||||||||||  ||||||| | ||||||||||||  || ||||||| |||||| ||||||||||| || ||||| |||| |||||||| | ||  ||    
T  25504499 aacatgcatgtatagacttgactgaggtttcaccacttgtgggattaggcgtcaggccttttacggtatgacaggcaaccct-aaagttgcatcaagcaa 25504401  T
Q  257 gcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgaca 320  Q
      ||||||| ||||||||  ||||| | |||||| ||||| ||| ||| | |||||||||||||    
T  25504400 atggtcaaacatgagaaaacgtgttctaacaatcgacatgtttttataccgtttgcttttgaca 25504337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 12918273 - 12918466
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || | ||||| || |||||| ||||  || ||||| |  || ||||||||||||||||| |  || ||||||||||||||| ||| ||    
T  12918273 aacatgcatgtgtgtagttgactggagtttcatcacttgtgggattaagattcggggcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaa 12918372  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || ||||||| || |||||  ||||| ||||||||||||  |||| |||  |||| ||||||||||||  |||||| || || ||||| |||||    
T  12918373 agtggtcaaacataagaaatcgtgttctgacaatcaacacacttttatactatttacttttgacactttcgacttcctagcatcagagattgtt 12918466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 53170698 - 53170570
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcg-taaataaagcggtcaaatatga 270  Q
    ||||||| ||||||||||||||| || ||||||| ||| |  ||||||| ||| || |||||||||||||||| | | ||  |||||  | |||| ||||    
T  53170698 acttgactggggtttcaccactcgtgggattaggtgtcggaccttttacagtatgacaggcagccctaaaagtcgtgttaggtaaagtagccaaacatga 53170599  T
Q  271 gaaagtgtgttttgacaatcaacatgctt 299  Q
    ||||| ||||| ||||| |||||||||||    
T  53170598 gaaagcgtgttctgacagtcaacatgctt 53170570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 3330152 - 3330078
Alignment:
Q  161 tgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagc 235  Q
    ||||||| || ||||||| ||||||||||||||  || | ||||||||  ||||||||||||||||| |||||||    
T  3330152 tgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacggtaggacaggcagc 3330078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 48656866 - 48656978
Alignment:
Q  212 ggcttttacggtaggataggcagccctaaaagttgcgtaaa-taaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcattt 310  Q
    ||||||||| ||| || || |||||||||||||| | | || ||||  || |||| ||||||||||||||| || ||||||| ||| ||| ||| |||||    
T  48656866 ggcttttacagtatgacagacagccctaaaagtttcatcaagtaaaatggacaaacatgagaaagtgtgttatgtcaatcaaaatgtttttataccattt 48656965  T
Q  311 gcttttgacactt 323  Q
    | |||||||||||    
T  48656966 gtttttgacactt 48656978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 600699 - 600786
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||| ||||||||  ||||| | ||||| |||||||||| ||| |||||||||||| |||||  |  ||| |||||||||||||||||    
T  600699 caaacatgagaaaacgtgttctaacaattaacatgcttttataccatttgcttttgtcactttcggtttcctaacaccagaggttgtt 600786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 45760839 - 45760910
Alignment:
Q  260 gtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttc 331  Q
    |||||| ||||||||| |||||||||||||||||||  ||| ||| | ||||| ||||||| || |||||||    
T  45760839 gtcaaagatgagaaagcgtgttttgacaatcaacatatttttatatcttttgcatttgacatttttgacttc 45760910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1736879 - 1736845
Alignment:
Q  1 tctttgttattccttttgtgtgaagtcaaccatat 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  1736879 tctttgttattccttttgtgtgaagtcaactatat 1736845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 6865842 - 6865888
Alignment:
Q  277 gtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||| |||| ||||||||||||| ||| ||||||||||||||||||    
T  6865842 gtgttctgactatcaacatgcttttatatcatttgcttttgacactt 6865888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 3330075 - 3330014
Alignment:
Q  283 tgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagagg 344  Q
    |||||||||||||||||| |||  ||||||||||||||||| || |||| || || ||||||    
T  3330075 tgacaatcaacatgcttttatactatttgcttttgacacttttggcttcctagcatcagagg 3330014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 24720013 - 24719949
Alignment:
Q  283 tgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttg 347  Q
    |||||||||||||| ||| ||| ||||||  |||||||||| || |||| ||||| |||||||||    
T  24720013 tgacaatcaacatgtttttatatcatttgtgtttgacacttttgtcttcctaacaacagaggttg 24719949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 38535607 - 38535663
Alignment:
Q  293 catgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||||| | ||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  38535607 catgctcttataccatttgcatttgacacttttgacttcctagcaccagaggttgtt 38535663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 46440833 - 46440957
Alignment:
Q  201 ttaggggtcagggctttt-acggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgct 298  Q
    ||||||||| |||||||| || ||||||||   || |||||||||  ||| ||| |||| ||||||| || | |||||||||| | ||||| |||| | |    
T  46440833 ttaggggtcggggctttttacagtaggataaatagtcctaaaagtaacgtcaaacaaagtggtcaaacataaaaaagtgtgttctaacaattaacacgtt 46440932  T
Q  299 ttcatagcatttgcttttgacactt 323  Q
    || ||| ||||||||||||||||||    
T  46440933 tttatatcatttgcttttgacactt 46440957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 5532625 - 5532458
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| ||||||| ||||| ||||||||||||||  ||||||||||| ||| ||||||||||||| | ||||||||||||| ||||| ||  ||    
T  5532625 aacatgcatgtgtgaacttaaccggagtttcaccactcataggattaggggtcggggattttacggtaggacatgcagccctaaaagctgcgtcaagcaa 5532526  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || ||||||| ||||||||  ||||| |||||||||||||||||| |||  |||| ||||||||||||    
T  5532525 agtggtcaaacatgagaaaacgtgttgtgacaatcaacatgcttttatactatttacttttgacactt 5532458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 172 - 323
Target Start/End: Original strand, 9685331 - 9685483
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatga 270  Q
    ||||||| ||||||||||||||  || ||||||| |||||  ||||||| |||||||||||||||||||||   |||| ||  |||| || |||| ||||    
T  9685331 acttgactggggtttcaccacttgtgggattaggtgtcagaccttttaccgtaggataggcagccctaaaatccgcgtcaagcaaagtggccaaacatga 9685430  T
Q  271 gaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
     |||| ||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  9685431 aaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactt 9685483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 172 - 323
Target Start/End: Original strand, 4412982 - 4413134
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatga 270  Q
    ||||||| ||||||||||||||  || ||||| | |||||  ||||||| |||||| ||||| ||||||||| || || ||  |||| || |||| ||||    
T  4412982 acttgactggggtttcaccacttgtgggattaagtgtcagaccttttaccgtaggacaggcaaccctaaaagctgtgtcaagcaaagtggccaaacatga 4413081  T
Q  271 gaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  4413082 gaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactt 4413134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 199 - 323
Target Start/End: Original strand, 32029030 - 32029154
Alignment:
Q  199 gattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgct 298  Q
    |||| ||| |||||||||||||| ||||| | ||| |||||||| |||  |||  |||  ||| ||||||||||| |||||||  |||||||||||||||    
T  32029030 gatttgggatcagggcttttacgataggacatgcaaccctaaaaattgattaagcaaattggttaaatatgagaatgtgtgttcagacaatcaacatgct 32029129  T
Q  299 ttcatagcatttgcttttgacactt 323  Q
    |||||| |||||| |||||||||||    
T  32029130 ttcatatcatttgtttttgacactt 32029154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 17344844 - 17344677
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taa 255  Q
    ||||||||||| |  ||||||| |||||||||| |||  || ||||||| |||||  ||||||| |||||| || ||| ||| |||| ||||| || |||    
T  17344844 aacatgcatgtgtagacttgactggggtttcacaacttgtgggattaggtgtcagaccttttaccgtaggaaagccagtccttaaagctgcgtcaagtaa 17344745  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
     | || |||| | ||||||  ||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  17344744 ggtggccaaacacgagaaaacgtgttttcacaatcaacatgcttttataccatttgcttttgacactt 17344677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 28225206 - 28225039
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || ||||||  |||||||||| |||  || | ||||| || |||||||||||||||||| |  || |  |||||| ||||| ||  ||    
T  28225206 aacatgcatgtgtggacttgaatggggtttcactacttgtgggcttaggagttagggcttttacggtaggacaaacaactttaaaagctgcgtcaagcaa 28225107  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || |  |||||||||||||| || || |||||||||||||||||| ||| ||||||||||||||||||    
T  28225106 agtgaccaaatatgagaaagcgtattctgacaatcaacatgcttttataccatttgcttttgacactt 28225039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 326
Target Start/End: Original strand, 23484839 - 23485009
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| |  ||||||  ||||||||||||||  || ||||| | ||| || |||| ||||| ||| |   ||||||||||| | ||| ||| ||    
T  23484839 aacatgcatgtgtagacttgattggggtttcaccacttgtgggattaagtgtcgggcctttaacggtgggacaactagccctaaaagctacgtcaaacaa 23484938  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctg 326  Q
    || || ||||||||||||||  |||| |||||||||||||||||| ||| |||||| ||||||||||||||    
T  23484939 agtggccaaatatgagaaagcatgttctgacaatcaacatgcttttataccatttgtttttgacacttctg 23485009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 41867874 - 41867976
Alignment:
Q  222 gtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgaca 320  Q
    |||||| |||||||| |||||| ||||| ||  |||| ||||||| |||||||||  |||| |||||||||||||||||| ||| |||||||||||||||    
T  41867874 gtaggacaggcagccttaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttataccatttgcttttgaca 41867973  T
Q  321 ctt 323  Q
    |||    
T  41867974 ctt 41867976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 19161708 - 19161851
Alignment:
Q  181 gggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaataaa-gcggtcaaatatgagaaagtgtg 279  Q
    |||||||||||||  |||||||||  |||||| |||||| ||||||| |  || ||||||||  ||||| || ||| | || |||| |||| |||| |||    
T  19161708 gggtttcaccacttgtgagattagatgtcaggccttttatggtaggacatacatccctaaaatctgcgtcaagaaaagtgggcaaacatgaaaaagcgtg 19161807  T
Q  280 ttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || |||||||||||||| ||| ||| ||||||||||||||||||    
T  19161808 ttctgacaatcaacatgtttttataccatttgcttttgacactt 19161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 9675050 - 9674980
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtagga 227  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||| ||||  |||||| |||||||    
T  9675050 aacatgcatgtatgaacttgattggggtttcaccactcatgggattagggatcagaccttttatggtagga 9674980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 292
Target Start/End: Complemental strand, 44686625 - 44686490
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaataaa 256  Q
    ||||||||||| || ||||||| ||||||||||||||  || | ||||||||| ||||||||||| ||||| || ||| |||||||| ||   ||  ||     
T  44686625 aacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacgataggacagacagtcctaaaagctggtcaagcaat 44686526  T
Q  257 gcggtcaaatatgagaaagtgtgttttgacaatcaa 292  Q
    | || |||| ||||||||| ||||| ||||||||||    
T  44686525 gtggccaaacatgagaaagcgtgttctgacaatcaa 44686490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 320
Target Start/End: Original strand, 18744855 - 18745019
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taa 255  Q
    ||||||||||| |  ||||||| ||||||||||||||  || ||||||| |||||| | ||||| |||  | ||| |||||| ||||  |||| || | |    
T  18744855 aacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcaggccatttaccgtaacacaggaagcccttaaagcagcgtcaagtta 18744954  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgaca 320  Q
     | || |||| | ||||||| ||||| ||||||||||||| |||| ||| |||||||||||||||    
T  18744955 ggtggccaaacacgagaaagcgtgttctgacaatcaacatacttttataccatttgcttttgaca 18745019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 33612559 - 33612641
Alignment:
Q  267 atgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    ||||||||  |||||||||||||||||||| ||| |||  |||||  |||||||||| || |||| ||||||| |||||||||    
T  33612559 atgagaaaacgtgttttgacaatcaacatgattttatacaatttgtatttgacacttttggcttcctaacaccggaggttgtt 33612641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 3968408 - 3968485
Alignment:
Q  254 aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttc 331  Q
    |||| ||||||||||||||||   ||||||||||||||| ||||||| |||  |||||| ||||||| || |||||||    
T  3968408 aaagtggtcaaatatgagaaaacatgttttgacaatcaatatgcttttatacaatttgcgtttgacatttttgacttc 3968485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 3825933 - 3825841
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt 249  Q
    ||||||||||| || ||||||  | ||||||||| ||  || |||||||||||||| ||||||||||| || ||  ||||||||||| |||||    
T  3825933 aacatgcatgtgtggacttgattgaggtttcaccccttgtgggattaggggtcaggacttttacggtatgacagagagccctaaaagctgcgt 3825841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 2888616 - 2888529
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||| ||||||||  ||||| |||||||||||||| ||| ||| |||| | || |||||||| || |||| |||||| ||||||||||    
T  2888616 caaacatgagaaaacgtgttctgacaatcaacatgtttttataccattcgtttatgacacttttggcttcctaacacaagaggttgtt 2888529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 20142753 - 20142793
Alignment:
Q  283 tgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  20142753 tgacaatcaacatgcttttataccattttcttttgacactt 20142793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 157 - 349
Target Start/End: Complemental strand, 34644772 - 34644579
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||| ||||||||||||||  || | ||||||||| ||||||||||||||||| | ||| ||||||||||||||| ||| ||    
T  34644772 aacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacaagcaaccctaaaagttgcgtcaaacaa 34644673  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || || |||| ||||||||| ||||| |||||| | ||||||||| ||| |||||| |||||||||||  | |||| || || |||||||||||    
T  34644672 agtggccaaacatgagaaagcgtgttctgacaacctacatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgtt 34644579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 2764685 - 2764518
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| |||||||||  | ||||||||||||  || | ||||||||  | ||||||| |||||||||||||| ||||||||||| || | | ||    
T  2764685 aacatgcatgtgtgaacttgattgaggtttcaccacttgtgggtttaggggttggtgcttttatggtaggataggcagtcctaaaagttgtgtcagacaa 2764586  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || ||||||| ||||||||  |||||  ||||||||||||||||| ||  ||||| ||||||||||||    
T  2764585 agtggtcaaacatgagaaaacgtgttccgacaatcaacatgcttttatgccattttcttttgacactt 2764518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 29169695 - 29169887
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taa 255  Q
    ||||||||||| |  ||||||| ||||||||||||||  || ||||||| ||| || ||||||| |||||| || ||||||| ||||||| || || |||    
T  29169695 aacatgcatgtgtagacttgactggggtttcaccactt-tgggattaggtgtcgggccttttaccgtaggacagacagcccttaaagttgtgtcaagtaa 29169793  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
     | || |||| | ||||||  ||||| |||||||||||||||||| ||| ||||||||||||||||||  |  ||| || ||||||||||||||    
T  29169794 ggtggccaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgtt 29169887  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 323
Target Start/End: Original strand, 28041043 - 28041195
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatga 270  Q
    ||||||| |||||||||| |||  || ||||||| ||| |  ||||||| |||||||||||||| ||||||   |||| ||| |||| || |||| ||||    
T  28041043 acttgactggggtttcactacttgtgggattaggtgtcggaccttttaccgtaggataggcagctctaaaatccgcgtcaaacaaagtggccaaacatga 28041142  T
Q  271 gaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||||||||| |||||||||||| | ||| ||| ||||||||||||||||||    
T  28041143 gaaagtgtgttctgacaatcaacaggtttttataccatttgcttttgacactt 28041195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 172 - 349
Target Start/End: Original strand, 45659563 - 45659742
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccct-aaaagttgcgtaaa-taaagcggtcaaatatg 269  Q
    ||||||| ||||||||||||||  || |||||||  || || ||||||| |||||| | |||||||| ||||| ||||| || ||| | || |||| | |    
T  45659563 acttgactggggtttcaccacttgtgggattaggtatcgggccttttaccgtaggacatgcagcccttaaaagctgcgtcaagtaaggtggccaaacacg 45659662  T
Q  270 agaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||  || ||| || ||||||||| ||||    
T  45659663 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctatcaccagaggctgtt 45659742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 323
Target Start/End: Complemental strand, 19035638 - 19035486
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatga 270  Q
    ||||||| ||| |||||||| |  || ||||||| ||| |  ||||||| |||||  ||||||||||||||| ||||| ||  |||| || |||| ||||    
T  19035638 acttgactgggatttcaccagttgtgggattaggtgtcggaccttttaccgtagggcaggcagccctaaaagctgcgtcaagcaaagtggccaaacatga 19035539  T
Q  271 gaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||| ||||| |||||||||||||||||| ||| ||||| ||||||||||||    
T  19035538 gaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacactt 19035486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 4861890 - 4862083
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taa 255  Q
    ||||||||||| || | ||||| || |||||||||||  |  |||||||||||  | | |||| ||||||| || ||||| |||||||||||| || |||    
T  4861890 aacatgcatgtgtggatttgactggtgtttcaccacttgttggattaggggtcttgacatttatggtaggacagacagccttaaaagttgcgtcaagtaa 4861989  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |  ||||||| ||||||||| || || |||||| |||||| |||| |||  |||||||||||||||||  || ||| |||||||| | ||||||    
T  4861990 aatggtcaaacatgagaaagcgtcttctgacaagcaacatacttttatacaatttgcttttgacactttcgatttcctaacaccaaaagttgtt 4862083  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 349
Target Start/End: Complemental strand, 38731705 - 38731622
Alignment:
Q  266 tatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||||||||| ||||| ||||||||||||| |||| |||  |||||||||||| |||| || |||| || ||||||||||||||    
T  38731705 tatgagaaagcgtgttctgacaatcaacatacttttatacaatttgcttttgaaacttttggcttcttagcaccagaggttgtt 38731622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 36486995 - 36486925
Alignment:
Q  253 taaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||  ||| |||  |||||||||||||||||    
T  36486995 taaagtggtcaaatatgagaaagcgtgttttgacaatcaatatctttttatataatttgcttttgacactt 36486925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 310
Target Start/End: Original strand, 50161318 - 50161472
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || |||| ||||   ||||||||||| ||  ||||||||    | |||||||||||||| || || ||||||||||||||| ||  ||    
T  50161318 aacatgcatgtgtggacttaaccgatatttcaccactcgtggaattaggggctgagacttttacggtaggacagacaaccctaaaagttgcgtcaagcaa 50161417  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcattt 310  Q
    || || |||| ||||||||| ||||| | |||||||||||||||| ||| |||||    
T  50161418 agtggacaaacatgagaaagcgtgttctcacaatcaacatgcttttatatcattt 50161472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 21473103 - 21473042
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||| ||||||||| ||||| |||||||||||||| ||| ||| ||||||||||||||||||    
T  21473103 caaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactt 21473042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 22346995 - 22346934
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||||||||||| ||||| ||||||||||||||| || ||| | ||||||||||||||||    
T  22346995 caaatatgagaaagcgtgttctgacaatcaacatgcgtttataccttttgcttttgacactt 22346934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 16500186 - 16500065
Alignment:
Q  211 gggcttttacggtaggataggcagccctaaaagttgcgtaaa-taaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatt 309  Q
    ||||||||||||||||| || ||  |||||||||||||| |  ||||| || ||||||| |||||   |||| | ||||| ||||||| || |||  |||    
T  16500186 gggcttttacggtaggacagacaatcctaaaagttgcgtcacgtaaagtggccaaatataagaaaacatgttctaacaattaacatgcctttatactatt 16500087  T
Q  310 tgcttttgacacttctgacttc 331  Q
    |||||||||||||| |||||||    
T  16500086 tgcttttgacacttttgacttc 16500065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 293
Target Start/End: Original strand, 37932119 - 37932255
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||  || ||||||  | ||||||||||||  || ||||||||| || ||||||||| ||| || || ||||||||||||||| || ||  ||    
T  37932119 aacatgcatgcgtggacttgattgaggtttcaccacttgtgggattaggggccaaggcttttacagtaagacagacagccctaaaagttgtgtcaagcaa 37932218  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaac 293  Q
    |  ||||||||| ||||||| ||||| |||||||||||    
T  37932219 aatggtcaaatacgagaaag-gtgttctgacaatcaac 37932255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 31737263 - 31737391
Alignment:
Q  196 tgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaaca 294  Q
    |||||||||| |||||  ||||||||||| ||||  | ||||||||||  |||| ||  |||| || |||| ||||||||   | || ||||||||||||    
T  31737263 tgagattaggtgtcagaccttttacggtaagataaacggccctaaaagcggcgtcaagcaaagtggccaaacatgagaaaacatattctgacaatcaaca 31737362  T
Q  295 tgctttcatagcatttgcttttgacactt 323  Q
    |||||| ||| |||||| |||||||||||    
T  31737363 tgcttttataccatttgtttttgacactt 31737391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 25375751 - 25375826
Alignment:
Q  174 ttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt 249  Q
    |||||| ||||||||| |||| |  ||||||||||||| ||||||||||||||| || || | | |||||||||||    
T  25375751 ttgaccagggtttcactactcgtcggattaggggtcagagcttttacggtaggacagacaactccaaaagttgcgt 25375826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 323
Target Start/End: Complemental strand, 42920038 - 42919899
Alignment:
Q  184 tttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttt 282  Q
    |||||| |||| || ||||| ||||| | ||||||| | ||||| |  || ||||||||||||| | ||| ||||||| |||| ||||||||  |||||     
T  42920038 tttcactactcgtgggattacgggtcggagcttttatgataggacaaacaaccctaaaagttgcatcaaacaaagcggccaaacatgagaaac-gtgttc 42919940  T
Q  283 tgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    | |||||||||||| ||| ||  ||| ||||||||||||||    
T  42919939 tcacaatcaacatgtttttatgtcatctgcttttgacactt 42919899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 33220612 - 33220779
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| |||| ||||| ||||||||||||||  || | ||||||||| ||||||||||||||||| || |||| ||||||| ||| | ||  ||    
T  33220612 aacatgcatgtgtgaatttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacagctctaaaagctgcatcaagcaa 33220711  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| ||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  33220712 agtggccaaacatgagaaagcgtgtgttgacaatcaacatgcttttataccatttgcttttgacactt 33220779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 344
Target Start/End: Original strand, 17249209 - 17249394
Alignment:
Q  160 atgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagc 258  Q
    |||||||| || ||||||| |||||||||||| |  || | || || ||  | ||||||||||||||| |  || ||||||||||||||| ||| ||||     
T  17249209 atgcatgtgtggacttgactggggtttcaccatttgtgggtttcggagtgggcgcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagt 17249308  T
Q  259 ggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagagg 344  Q
    || |||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| || |||| || || ||||||    
T  17249309 ggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagagg 17249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 4206497 - 4206690
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| |  ||||||| ||||||||||||||  || |||||||  ||||  |||||||||||||| | |||||| ||||||| |||| ||  ||    
T  4206497 aacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggcatcagaccttttacggtaggacatgcagccttaaaagtggcgtcaagcaa 4206596  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || ||  ||| ||||||||| ||||| ||||||| |||||||||| ||| ||||||||||||||||||  |  ||| || ||||||||||||||    
T  4206597 agtggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgtt 4206690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 357618 - 357785
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||| || |||||||||||  || | ||||||||| | ||||||||||||||| ||||||||||||||| | ||| ||  ||    
T  357618 aacatgcatgtgtggacttgactggagtttcaccacttgtgggtttaggggtcggtgcttttacggtaggacaggcagccctaaaagcttcgtcaagcaa 357717  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| ||||||||| ||||| ||||||| |||||||||| ||| | |||| |||| ||||||    
T  357718 agtggccaaacatgagaaagcgtgttctgacaatgaacatgcttttataacctttgtttttaacactt 357785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 323
Target Start/End: Complemental strand, 34415630 - 34415475
Alignment:
Q  169 tgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaata 267  Q
    |||||||||  ||||||||||||| | |  |||||||||||||| |||||||||||||||||||| || || ||| ||||| ||  |||  ||  ||| |    
T  34415630 tgaacttgattggggtttcaccacacgttggattaggggtcaggacttttacggtaggataggcatccttacaagctgcgtcaagcaaaatggcgaaaca 34415531  T
Q  268 tgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||||||||||| |||||||||||||||||| ||  |||||| |||||||||||    
T  34415530 tgagaaagtgtgttctgacaatcaacatgcttttatgccatttgtttttgacactt 34415475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 323
Target Start/End: Original strand, 28008900 - 28009058
Alignment:
Q  169 tgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaata 267  Q
    |||||||||| || |||||||||||| || ||||||||||| ||||||||||||||||| | ||| ||||||||| | ||| ||  |||||||||||| |    
T  28008900 tgaacttgactggagtttcaccactcgtgggattaggggtcggggcttttacggtaggacatgcaaccctaaaagctacgtcaagcaaagcggtcaaaca 28008999  T
Q  268 tgagaaagtgtgttttgacaatc---aacatgctttcatagcatttgcttttgacactt 323  Q
    ||||||||  |||| | ||||||   || ||| ||| ||| ||||||||||||||||||    
T  28009000 tgagaaagcttgttctaacaatcaagaatatggttttataccatttgcttttgacactt 28009058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 34304702 - 34304535
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || ||||||  ||||||||||||||  || | ||||| ||| ||||||||||||| ||| ||  ||||||||||| ||||| ||  ||    
T  34304702 aacatgcatgtgtggacttgattggggtttcaccacttgtgggtttaggagtcggggcttttacggttggacagctagccctaaaagctgcgtcaagcaa 34304603  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |     |||| ||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  34304602 aataaccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactt 34304535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 299
Target Start/End: Complemental strand, 12401537 - 12401394
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| |  ||||||  |||||||||||||| ||| ||||| || |||||||||||| ||||||| | ||||| ||||||||||||| ||| ||    
T  12401537 aacatgcatgtgtagacttgattggggtttcaccacttatgggattatggttcagggcttttatggtaggacaagcagcactaaaagttgcgtcaaacaa 12401438  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctt 299  Q
    || || |||| || ||| || ||||||||  |||||||||||||    
T  12401437 agtggccaaacataagatagcgtgttttgctaatcaacatgctt 12401394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 29337984 - 29338167
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || |||||| || ||||| |||||||    |||||| |||| ||||||||||||||||| |  ||  | |||||| || || ||  ||    
T  29337984 aacatgcatgtgtggacttgatcgaggttttaccactc----gattagtggtcggggcttttacggtaggacaaacaatcataaaagatgtgtcaagcaa 29338079  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagag 343  Q
    ||| | |||| ||||||||  ||||| | |||||||||||||| | ||| |||||||||||||||||||||||||| || ||||||||    
T  29338080 agctgccaaacatgagaaaacgtgttctaacaatcaacatgctcttataccatttgcttttgacacttctgacttcctagcaccagag 29338167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 28543581 - 28543414
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || | ||||| | ||||||||||||  || |||||| ||||||| ||||||||||| || |||||||| ||||||| |||| ||  ||    
T  28543581 aacatgcatgtgtggatttgactgaggtttcaccacttgtgggattagaggtcaggacttttacggtaagacaggcagccttaaaagtcgcgtcaagcaa 28543482  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| ||||||||  ||||||||| |||||  ||||| | |||  ||||| |||||||||||    
T  28543481 agtggccaaacatgagaaatcgtgttttgaaaatcactatgctcttatactatttgattttgacactt 28543414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 4165934 - 4166016
Alignment:
Q  267 atgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    ||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||  |  ||| || ||||||||||||||    
T  4165934 atgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgtt 4166016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 278
Target Start/End: Complemental strand, 32115895 - 32115773
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| |  ||||||||||||||||| |||| ||| ||||||| ||| ||  ||||||| ||||| | |||||| |||||||||||| ||| ||    
T  32115895 aacatgcatgtgtagacttgaccggggtttcatcacttatgggattaggtgtcgggcattttacgttaggacatgcagccttaaaagttgcgtcaaacaa 32115796  T
Q  256 agcggtcaaatatgagaaagtgt 278  Q
    || || |||| ||||||||||||    
T  32115795 agtggccaaacatgagaaagtgt 32115773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 45594 - 45745
Alignment:
Q  173 cttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgag 271  Q
    |||||| || |||||||||||  || ||||||| ||| |  ||||||| |||||| ||||||| ||||||| ||| | ||  |||| | ||||| |||||    
T  45594 cttgacaggtgtttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaggcagctctaaaagctgcatcaagcaaagtgatcaaacatgag 45693  T
Q  272 aaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||  ||||| |||||||||||||||||| ||  |||||| |||||||||||    
T  45694 aaaacgtgttctgacaatcaacatgcttttattccatttgtttttgacactt 45745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 34169020 - 34168913
Alignment:
Q  211 gggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatt 309  Q
    |||||||||| |||||| | ||| |||||||| |||||| ||  |||| || |||| |||||||||  ||||| ||||| ||||||||||| ||| ||||    
T  34169020 gggcttttaccgtaggacatgcaaccctaaaatttgcgtcaagcaaagtggccaaacatgagaaagcatgtttggacaagcaacatgcttttataccatt 34168921  T
Q  310 tgcttttg 317  Q
    ||||||||    
T  34168920 tgcttttg 34168913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 349
Target Start/End: Complemental strand, 959786 - 959593
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||  |  ||||||||||| ||| ||||||| ||| || |||||||||||||| |  || |||||||||||| || ||  ||    
T  959786 aacatgcatgtgtggacttgattgaagtttcaccacttatgggattaggtgtcgggccttttacggtaggacaaacaaccctaaaagttgtgtcaagcaa 959687  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || ||  ||  ||||||||  ||||| ||||||||||||||  || ||| |||||| |||||||| ||  |  ||| || ||||||||||||||    
T  959686 agtggctaaccatgagaaaacgtgttctgacaatcaacatgtctttataccatttgtttttgacattttcggtttcctagcaccagaggttgtt 959593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 321
Target Start/End: Original strand, 34554201 - 34554343
Alignment:
Q  180 ggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgt 278  Q
    |||||||||||| |  || |||||||| ||||||||||||  |||||  || || | ||||||||||||| ||  ||| ||  |||| ||||||||| ||    
T  34554201 ggggtttcaccaattgtgggattagggatcagggcttttaaagtaggtcagacaacactaaaagttgcgtcaagcaaaacgaccaaacatgagaaagcgt 34554300  T
Q  279 gttttgacaatcaacatgctttcatagcatttgcttttgacac 321  Q
    ||| ||| |||||| ||| ||| ||| ||||| ||||||||||    
T  34554301 gttctgataatcaagatgtttttataccatttacttttgacac 34554343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 6225184 - 6225135
Alignment:
Q  250 aaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctt 299  Q
    |||||||| ||||||| |||||||| | |||| |||||||||||||||||    
T  6225184 aaataaagtggtcaaacatgagaaattttgttgtgacaatcaacatgctt 6225135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 157 - 344
Target Start/End: Complemental strand, 39434873 - 39434685
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || ||||||| ||||||||||||||  || | ||||||||   ||||||||| |||||| ||| ||| ||||||||||||| ||  ||    
T  39434873 aacatgcatgtgtgtacttgactggggtttcaccacttgtgggtttaggggtggaggcttttacagtaggacaggaagctctaaaagttgcgtcaagcaa 39434774  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagagg 344  Q
    || || |||| ||||||||| ||||| |||||||||||||||||| ||| |||||| ||||||||||| ||||||| || || ||||||    
T  39434773 agtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttcctagcatcagagg 39434685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 25021715 - 25021908
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || |||||||||| |||||||||||  || |||||||||||   | |||||| ||| || |  ||||||||||||||| || ||  ||    
T  25021715 aacatgcatgtgtggacttgaccggagtttcaccacttgtgggattaggggtcgatgtttttacagtatgacatacagccctaaaagttgtgtcaagcaa 25021814  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || ||| ||||||||||||||||||| | |||||||||||| ||| ||| ||||| ||||||||| || || |||| || ||||||||||||||    
T  25021815 agtggtgaaatatgagaaagtgtgttctcacaatcaacatgtttttataccattttcttttgacatttttggcttcctagcaccagaggttgtt 25021908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 180 - 323
Target Start/End: Complemental strand, 38815477 - 38815333
Alignment:
Q  180 ggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgt 278  Q
    ||||| ||||||||  || ||||||||||| ||||||||| ||||||| || ||||||||||||   ||  ||| |||| || |||| ||||||||| ||    
T  38815477 ggggtatcaccacttgtgggattaggggtcggggcttttatggtaggacagacagccctaaaagccacgccaaacaaagtggccaaacatgagaaagcgt 38815378  T
Q  279 gttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||| |||||||||||||||||| ||| ||||||||||||||||||    
T  38815377 gttctgacaatcaacatgcttttataccatttgcttttgacactt 38815333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 349
Target Start/End: Complemental strand, 8620013 - 8619827
Alignment:
Q  164 atgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taaagcggtc 262  Q
    |||| |||||||||| ||||||||||||||  || |||||| | ||  | |||||||| ||| | || |||||||||||||||||| || ||||  ||||    
T  8620013 atgtgtgaacttgactggggtttcaccacttgtgggattagagatcgtgacttttacgatagaacagacagccctaaaagttgcgtcaagtaaaatggtc 8619914  T
Q  263 aaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    ||| |||| |||| || |||||||||||||| |||||| ||| |||||| |||| ||| || || |||  |||||||||||||||||    
T  8619913 aaacatgaaaaagcgtattttgacaatcaacgtgcttttataccatttgtttttaacatttttggctttctaacaccagaggttgtt 8619827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 349
Target Start/End: Complemental strand, 24125234 - 24125041
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| |  ||||||| ||||||||||||||  || ||||| | |||  | |||||||||| ||| | ||||||||||||| ||| | ||  ||    
T  24125234 aacatgcatgtgtagacttgactggggtttcaccacttgtgggattatgcgtcgtgccttttacggtgggacaagcagccctaaaagctgcatcaagcaa 24125135  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |  || |||| ||||||||| ||| | |||||||||||||||||| ||| ||||||||||||||| || ||| ||| || ||||||||||||||    
T  24125134 aatggccaaacatgagaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttgatttcctagcaccagaggttgtt 24125041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 500433 - 500269
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| |  ||||||  | ||||||||||||  || ||||||| ||| || ||||||||||||||  | |||||||||||||||||| ||  ||    
T  500433 aacatgcatgtgtagacttgagtgaggtttcaccacttgtgggattaggtgtcgggccttttacggtaggaccgacagccctaaaagttgcgtcaagcaa 500334  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgaca 320  Q
    || || |||| ||||||||  ||||| |||||||||||||||||| ||| ||||| |||||||||    
T  500333 agtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttacttttgaca 500269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 35739888 - 35740054
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || ||||||| ||||||||||||||  || ||||| || || || |||||||||||||| || || |||||||||||| || ||  ||    
T  35739888 aacatgcatgtgtggacttgactggggtttcaccactagtgggattaagg-tcgggccttttacggtaggacagacatccctaaaagttgtgttaagcaa 35739986  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| ||||||||| | ||| |||||||||||||| ||| |||  ||| |||||||||||||    
T  35739987 agtggccaaacatgagaaagcgggttctgacaatcaacatgtttttatacaattagcttttgacactt 35740054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 337
Target Start/End: Original strand, 42922034 - 42922209
Alignment:
Q  163 catgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggt 261  Q
    ||||| || ||||||| || |||||| ||  | ||||||||  |||||| ||||||| |||| || | |||||| |||||||||||| ||| |||  |||    
T  42922034 catgtgtggacttgactggagtttcatcaaacgtgagattaatggtcagagcttttatggtaagacatgcagccataaaagttgcgtcaaacaaaatggt 42922133  T
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaaca 337  Q
    ||||| |||||||  |||||||||||||||| ||||||| | | ||||||| |||||||||| || |||| |||||    
T  42922134 caaatttgagaaaacgtgttttgacaatcaaaatgcttttaaatcatttgcctttgacacttttggcttcctaaca 42922209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 349
Target Start/End: Complemental strand, 3188152 - 3187982
Alignment:
Q  180 ggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagcc-ctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtg 277  Q
    ||||||||||||||  || | |||||| || ||||||||||||||||| ||| |||| ||||||||||| | ||  |||| ||  ||| ||||| ||| |    
T  3188152 ggggtttcaccacttgtgggtttaggg-tcggggcttttacggtaggacaggaagcctctaaaagttgcatcaagcaaagtggcaaaacatgaggaagcg 3188054  T
Q  278 tgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||| |||||||||||||||||| ||| ||||||||||||| ||||  | |||| || || |||||||||||    
T  3188053 tgttctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgtt 3187982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 349
Target Start/End: Complemental strand, 36004277 - 36004135
Alignment:
Q  208 tcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagc 306  Q
    |||||||||||||||| ||  | |||| ||  ||||||| ||||| ||||| ||  |||||||| |||||| ||| |||||||||||||| ||| ||| |    
T  36004277 tcagggcttttacggtggggcaagcagtccctaaagttgggtaaagtaaagtggctaaatatgacaaagtgcgttatgacaatcaacatgtttttatacc 36004178  T
Q  307 atttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||| | ||||||| || ||||||| || ||||||||||||||    
T  36004177 atttacatttgacatttttgacttcctatcaccagaggttgtt 36004135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 11611149 - 11611264
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || |||| || ||||||||||||||| || |||||    | |||||||||||| || ||||| || |||||||||||| || ||||||    
T  11611149 aacatgcatgtgtggacttcacaggggtttcaccactcgtgggatta----tgagggcttttacgataagatagacatccctaaaagttgtgtcaaataa 11611244  T
Q  256 agcggtcaaatatgagaaag 275  Q
    || || ||||||||||||||    
T  11611245 agtggccaaatatgagaaag 11611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 10189749 - 10189585
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    |||||| |||| || ||||||  ||| ||||||| ||  ||||||||||||| | |||||||| ||||||| |  ||  |||||||||||||  ||| ||    
T  10189749 aacatgtatgtgtggacttgattgggatttcaccgcttgtgagattaggggttaaggcttttatggtaggacatacattcctaaaagttgcgccaattaa 10189650  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgaca 320  Q
    ||  |||||| | |||||||  |||| |||||||||||||| ||| ||| ||||||| |||||||    
T  10189649 agtagtcaaacaagagaaagcatgttctgacaatcaacatgtttttatatcatttgcatttgaca 10189585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 28196301 - 28196205
Alignment:
Q  253 taaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    ||||||||  ||| ||||||||||||||| ||| ||| |||||| ||| ||| |||||| ||||||||||| || |||| || ||||| ||||||||    
T  28196301 taaagcggctaaacatgagaaagtgtgttatgataataaacatgtttttataccatttgtttttgacacttttgtcttcctagcaccataggttgtt 28196205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 6592724 - 6592614
Alignment:
Q  214 cttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgc 312  Q
    |||||||| |||||||| ||| | |||||| ||||| ||  |||| || |||| ||||||||| ||||| | |||||||||||| ||| | | |||||||    
T  6592724 cttttacgataggatagacagtcgtaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgc 6592625  T
Q  313 ttttgacactt 323  Q
    |||||||||||    
T  6592624 ttttgacactt 6592614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 6618409 - 6618323
Alignment:
Q  238 taaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||||||||| ||||| ||  || ||| ||||||||| ||||| | |||||||||||| ||| | | ||||||||||||||||||    
T  6618409 taaaagttgcgtcaaatagagtagttaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactt 6618323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 349
Target Start/End: Complemental strand, 53785915 - 53785722
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taa 255  Q
    ||||||||||| |  ||||||| ||||||||||||||  || ||||||| ||| || ||||||| ||||||||||||||||| ||||  |||| || |||    
T  53785915 aacatgcatgtgtagacttgactggggtttcaccactagtgggattaggtgtcgggccttttaccgtaggataggcagcccttaaagccgcgtcaagtaa 53785816  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
     | || |||| | ||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||  |  ||| || ||||||||||||||    
T  53785815 ggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgtt 53785722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 172 - 323
Target Start/End: Complemental strand, 44198958 - 44198806
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatga 270  Q
    ||||||| ||||||||||||||  || ||||||| ||| |  ||||||| |||||  ||||||| ||||||||||||| ||  |||| || |||| ||||    
T  44198958 acttgactggggtttcaccacttgtgggattaggtgtcggaccttttaccgtaggtcaggcagctctaaaagttgcgtcaagcaaagtggccaaacatga 44198859  T
Q  271 gaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||| ||||| ||| |||||||||||||| ||| ||||||||||||||||||    
T  44198858 gaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacactt 44198806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 316
Target Start/End: Complemental strand, 13582715 - 13582555
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| |  ||||||||| ||||||| ||||  || ||||||| |||||| ||||||| |||||| | ||||||||||||| ||||| ||| ||    
T  13582715 aacatgcatgtgtagacttgaccgaggtttcaacacttgtgggattaggtgtcaggccttttaccgtaggacaagcagccctaaaagctgcgtcaatcaa 13582616  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgctttt 316  Q
    || | ||||| || |||||||||||| ||||||||||| || ||| ||| |||||| ||||    
T  13582615 agtgatcaaacataagaaagtgtgttctgacaatcaacgtgtttttataccatttgttttt 13582555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 39583130 - 39583297
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||  || |||||||   ||||| ||||||  || ||||| ||||| || | |||| ||||||||||||||||||||||| ||||| ||  ||    
T  39583130 aacatgcatgcgtggacttgacttaggttttaccacttgtgggattaagggtcgggccatttatggtaggataggcagccctaaaagctgcgtcaagcaa 39583229  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| ||||||||| ||||| |||||||||||||||||| ||| |||||| ||| |||||||    
T  39583230 agtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgttttcgacactt 39583297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 52741519 - 52741606
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||| ||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||| ||  ||| || ||||||||||||||    
T  52741519 caaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcctagcaccagaggttgtt 52741606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 349
Target Start/End: Complemental strand, 38146239 - 38146069
Alignment:
Q  180 ggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgt 278  Q
    |||||||||| |||  || ||||||||||| | ||||| | ||||||| | |||||||||||||  || | ||| |||| |||||||   |||| |  ||    
T  38146239 ggggtttcacgacttgtgggattaggggtcggagctttgagggtaggacatgcagccctaaaagcggcatcaatcaaagtggtcaaacgcgagacaacgt 38146140  T
Q  279 gttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||||||||||||||||| ||| ||| ||||| | |||||||||| ||||||| || ||||||||||||||    
T  38146139 gttttgacaatcaacatgtttttataccatttacatttgacacttttgacttcctagcaccagaggttgtt 38146069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 349
Target Start/End: Complemental strand, 7901064 - 7900871
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| || ||||||| ||||||||||||||  || ||||||||||  || ||||||||||||||  |  | ||||||||  ||||| ||  ||    
T  7901064 aacatgcatgtgtggacttgactggggtttcaccacttgtgggattaggggttgggtcttttacggtaggacggatatccctaaaaactgcgtcaagcaa 7900965  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |   | | || ||||||||| || || |||||||||||||||||| ||| |||||| |||||||||||  | |||| || || |||||||||||    
T  7900964 aatagccgaacatgagaaagcgttttctgacaatcaacatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgtt 7900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 49018169 - 49018002
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    ||||||||||| | |||||||| || |||||||||||  ||  |||||| |||  | |||||||||||||| | ||| |||| |||||| ||||||  ||    
T  49018169 aacatgcatgtgtaaacttgactggagtttcaccacttgtggaattaggtgtcgagccttttacggtaggacaagcaaccctgaaagttacgtaaaacaa 49018070  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || |  |||| ||||||||||||||| | |||||||||||| ||| ||| |||||  |||| ||||||    
T  49018069 agtgaccaaacatgagaaagtgtgttctaacaatcaacatgtttttataccattttttttttacactt 49018002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 26772910 - 26772776
Alignment:
Q  211 gggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatt 309  Q
    |||| ||||| |||||| | ||| |||||||||||| || ||  |||| || |||| || |||||  ||||| |||||||||||||||||| ||| ||||    
T  26772910 gggcatttacagtaggacatgcatccctaaaagttgtgtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccatt 26772811  T
Q  310 tgcttttgacacttctgacttcgtaacaccagagg 344  Q
    |||||||||||||| || |||| || || ||||||    
T  26772810 tgcttttgacacttttggcttcctagcatcagagg 26772776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 26856766 - 26856826
Alignment:
Q  259 ggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgac 319  Q
    |||||||||||| |||| ||||| |||||||||||||||||| ||| ||| ||||||||||    
T  26856766 ggtcaaatatgataaagcgtgttgtgacaatcaacatgcttttataccatctgcttttgac 26856826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 328
Target Start/End: Original strand, 46940671 - 46940843
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    |||||| |||| |||||||||| | |||||||  |||| || |||||||||||  || ||||| ||||||| || || | ||||||| ||||| ||  ||    
T  46940671 aacatgtatgtgtgaacttgactgaggtttcattactcgtgggattaggggtcgaggattttatggtaggacagacaactctaaaagatgcgtcaagcaa 46940770  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgac 328  Q
    || || |||| || |||||   ||||  ||||||||||||||||| ||| |||||| ||||||||||| ||||    
T  46940771 agtggccaaacattagaaaacatgttccgacaatcaacatgcttttataccatttgtttttgacacttttgac 46940843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 38670885 - 38670948
Alignment:
Q  260 gtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||| ||||||||| ||||| |||||||||||||||||| |||  ||||| |||||||||||    
T  38670885 gtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacactt 38670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 323
Target Start/End: Original strand, 3443255 - 3443380
Alignment:
Q  199 gattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgc 297  Q
    ||||||| |||||| |||||||| ||||| ||  || |||||||||||||| ||  |||  || |||| |||| ||||||| || | |||||||||||||    
T  3443255 gattaggtgtcaggacttttacgataggacagagagtcctaaaagttgcgtcaagcaaaatggccaaacatgaaaaagtgtattctaacaatcaacatgc 3443354  T
Q  298 tttcatagcatttgcttttgacactt 323  Q
    ||| ||| ||||| || |||||||||    
T  3443355 ttttataccattttctgttgacactt 3443380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 32546895 - 32546834
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||| ||||||||| |||||  |||||||||||| |||| ||| ||||||||||||||||||    
T  32546895 caaacatgagaaagcgtgttcggacaatcaacatacttttataccatttgcttttgacactt 32546834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 5338796 - 5338682
Alignment:
Q  213 gcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgtt---ttgacaatcaacatgctttcatagcat 308  Q
    ||||||||||||||| ||  |||||||| |||||||| ||| |||   | |||| ||||||||||| |||   |||||| |||||||||||| |||  ||    
T  5338796 gcttttacggtaggacagaaagccctaagagttgcgtcaaacaaaattgccaaacatgagaaagtgcgttgcgttgacagtcaacatgcttttatacaat 5338697  T
Q  309 ttgcttttgacactt 323  Q
    |||||||||||||||    
T  5338696 ttgcttttgacactt 5338682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 52411903 - 52411959
Alignment:
Q  267 atgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||| || ||||| |||||||||||||||||| ||  ||||||||||||||||||    
T  52411903 atgagagagcgtgttctgacaatcaacatgcttttattccatttgcttttgacactt 52411959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 37132998 - 37133093
Alignment:
Q  254 aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||| ||| ||| ||||||||| ||||| |||||||||||||| ||| ||| |||||| |||| ||||||  |  ||| || ||||||||||||||    
T  37132998 aaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgttttttacactttcggtttcttagcaccagaggttgtt 37133093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 35236412 - 35236320
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt 249  Q
    ||||||||||| || ||||||  | |||||||||||   || |||||||| ||  | |||||| ||||||||||| ||| |||||||||||||    
T  35236412 aacatgcatgtgtggacttgattgaggtttcaccacctgtgggattagggatcgagccttttatggtaggataggtagctctaaaagttgcgt 35236320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 331
Target Start/End: Original strand, 28517188 - 28517363
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aa 255  Q
    |||||| |||| || ||||||| ||||||||||||||  || | ||||||||  |||||||||| |||||| || || ||||||||| ||||| ||  ||    
T  28517188 aacatgtatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacagtaggacagacaaccctaaaagctgcgtcaagcaa 28517287  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttc 331  Q
    || || |||| ||||||||| |||||| ||||||||||||| ||| ||| |||||||||||||||||| |||||||    
T  28517288 agtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttataccatttgcttttgacacttttgacttc 28517363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 4501464 - 4501297
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| |  ||||||| ||||||||||||||  || ||||||| ||| || ||||||| |||||| |  || ||||||||| ||||| ||| ||    
T  4501464 aacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcgggccttttaccgtaggacaaacaaccctaaaagctgcgtcaaacaa 4501365  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| ||||||||| ||||| |||||||||||||||||| |||  |||||||||||||||||    
T  4501364 agtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatataatttgcttttgacactt 4501297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 32584807 - 32584640
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || |||||||  |||||||||| ||  || ||||||||||| ||| ||||||||||||| | ||| |||||||| |||| | ||| ||    
T  32584807 aacatgcatgtgtggacttgactcgggtttcacctcttgtgggattaggggtcggggattttacggtaggacatgcaaccctaaaaattgcatcaaacaa 32584708  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || ||||||| ||||||||  ||||| |||||||||| ||||||| | | ||||||||||||||||||    
T  32584707 agtggtcaaacatgagaaaacgtgttctgacaatcaagatgcttttacaccatttgcttttgacactt 32584640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 172 - 349
Target Start/End: Complemental strand, 43857065 - 43856887
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatga 270  Q
    ||||||| ||||||||||||||  || ||||||||||| |||||||||| |||||| || || |  |||||| ||||| ||| |||| ||  | | ||||    
T  43857065 acttgacgggggtttcaccacttgtgggattaggggtcggggcttttacagtaggacagacaacattaaaagatgcgtcaatcaaagtggctagacatga 43856966  T
Q  271 gaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    ||||| ||||||||||||||||||||| || |||  |||||||||||||| || ||  ||| |||||||||||||||||    
T  43856965 gaaagcgtgttttgacaatcaacatgcgtttatacaatttgcttttgacatttttggtttcctaacaccagaggttgtt 43856887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 349
Target Start/End: Complemental strand, 19277484 - 19277306
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatga 270  Q
    ||||||| ||||||||||||||  |  |||||||  ||||  ||||| | |||||| |||||| |||||||| ||||| ||  ||||  | |||| ||||    
T  19277484 acttgactggggtttcaccacttgtcggattaggtttcagaccttttgccgtaggacaggcagtcctaaaagctgcgtcaagcaaagtagccaaacatga 19277385  T
Q  271 gaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    ||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||  |  ||| || ||||||||||||||    
T  19277384 gaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgtt 19277306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 30216062 - 30216126
Alignment:
Q  259 ggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  30216062 ggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttataccatttgcttttgacactt 30216126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 349
Target Start/End: Original strand, 21326765 - 21326932
Alignment:
Q  183 gtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgtt 281  Q
    |||||||||||  || ||||||| ||| |  ||||||| |||||| |  ||||||||||||  |||| ||  |||| || |||| ||||||||| |||||    
T  21326765 gtttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaaacagccctaaaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgtt 21326864  T
Q  282 ttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
     |||||||||||||||||| ||| ||||||||||||||||||  || ||| || ||||||||| ||||    
T  21326865 ctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctagcaccagaggctgtt 21326932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 349
Target Start/End: Complemental strand, 27521635 - 27521484
Alignment:
Q  199 gattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgc 297  Q
    ||||||| ||| || |||||||||||||| | ||| || |||||||||||| ||| |||| ||||||| ||||||||  ||||| |||||||||||||||    
T  27521635 gattaggtgtcgggccttttacggtaggacatgcacccttaaaagttgcgttaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaacatgc 27521536  T
Q  298 tttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
     || |||  |||| |||||||||||| ||  ||| || || |||||||||||    
T  27521535 atttatacaatttacttttgacacttttggtttcctagcatcagaggttgtt 27521484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 328
Target Start/End: Complemental strand, 3676831 - 3676673
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggc-agccctaaaagttgcgtaaat-aaagcggtcaaatatg 269  Q
    ||||||| ||||||||||||||  || ||||||| ||| |  ||||||| |||||| |||| ||||||||||| ||||| ||  |||| ||||||| ||     
T  3676831 acttgactggggtttcaccacttgtgggattaggtgtcggtccttttaccgtaggacaggccagccctaaaagctgcgtcaagcaaagtggtcaaacatc 3676732  T
Q  270 agaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgac 328  Q
    |||||| ||||| | || ||||| ||||||| ||| |||||||||||||||||| ||||    
T  3676731 agaaagcgtgttcttactatcaatatgcttttataccatttgcttttgacacttttgac 3676673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 349
Target Start/End: Complemental strand, 5825477 - 5825286
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    ||||||||||| || ||||||| ||||||||||||||  || | |||||||||  ||||||||||| |||| ||| ||||||||||| ||| | ||  ||    
T  5825477 aacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcgaggcttttacggcaggacaggaagccctaaaagctgcatcaagcaa 5825378  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || |  |||| |||| || | ||||| |||||||||||||| ||| ||| ||||| ||||||||||||  | | || || ||||||||||||||    
T  5825377 agtg--caaacatgacaatgcgtgttatgacaatcaacatgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgtt 5825286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 45613743 - 45613910
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taa 255  Q
    ||||||||||| |  ||||||| ||||||||||||||  |  ||||||| ||| || ||||| | |||||| || || ||||||||||||||| || |||    
T  45613743 aacatgcatgtgtagacttgactggggtttcaccacttgtaggattaggtgtcgggcctttttccgtaggacagacaaccctaaaagttgcgtcaagtaa 45613842  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
     | |  |||| | | ||||||||||| |||||||||||||| ||| ||| |||||| |||||||||||    
T  45613843 ggtgaccaaacacgggaaagtgtgttctgacaatcaacatgtttttataccatttgattttgacactt 45613910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 1249735 - 1249653
Alignment:
Q  214 cttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacat 295  Q
    ||||||||||||||||| |||||||||||  ||||| |||||||| ||||||| ||||||||| ||||||||| |||| ||||    
T  1249735 cttttacggtaggatagacagccctaaaacctgcgtcaaataaagtggtcaaacatgagaaagcgtgttttgataatccacat 1249653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 24527738 - 24527628
Alignment:
Q  214 cttttacggtaggataggcagccctaaaagttgcgtaaa-taaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgc 312  Q
    ||||||| |||||| |||||||||||||||  | || || ||||| ||  ||| ||||||||  ||||| |||||||||||||||||| ||| |||||||    
T  24527738 cttttaccgtaggacaggcagccctaaaagcagtgtcaagtaaagtgggaaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttgc 24527639  T
Q  313 ttttgacactt 323  Q
    |||||||||||    
T  24527638 ttttgacactt 24527628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 323
Target Start/End: Complemental strand, 983090 - 982988
Alignment:
Q  222 gtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgaca 320  Q
    |||||| |||||||| |||||| ||||| ||  |||| || |||| ||||||||  ||||| |||||||||||||||||| ||| ||||||||||||| |    
T  983090 gtaggacaggcagccataaaagctgcgtcaagcaaagtggccaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgata 982991  T
Q  321 ctt 323  Q
    |||    
T  982990 ctt 982988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 38839454 - 38839337
Alignment:
Q  237 ctaaaagttgcgtaaa-taaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgc----tttcatagcatttgcttttgacacttctgacttc 331  Q
    |||||||||||||||| ||||   |||||| |||||||||  |||| || ||||||||||||    ||| |||  ||||||||||||||||| |||||||    
T  38839454 ctaaaagttgcgtaaaataaaatcgtcaaacatgagaaagcatgttatgtcaatcaacatgcatgtttttatataatttgcttttgacacttttgacttc 38839355  T
Q  332 gtaacaccagaggttgtt 349  Q
     |||||| ||||||||||    
T  38839354 ctaacacgagaggttgtt 38839337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 10905246 - 10905157
Alignment:
Q  234 gccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||||||| ||||| ||  |||| || |||||||||||||  ||||| ||||| |||||||||||| ||| ||||||||||||||||||    
T  10905246 gccctaaaagctgcgtcaagcaaagtggccaaatatgagaaaaagtgttctgacactcaacatgcttt-ataccatttgcttttgacactt 10905157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 34772927 - 34772820
Alignment:
Q  215 ttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgct 313  Q
    |||||||||| |||||||||| ||||||||||  | ||| ||||  | ||||||||||||||||||||  |||||| || ||| ||| ||| ||||||||    
T  34772927 ttttacggtatgataggcagctctaaaagttg--tcaatcaaagtagccaaatatgagaaagtgtgttcggacaattaatatgtttttataccatttgct 34772830  T
Q  314 tttgacactt 323  Q
    ||||| ||||    
T  34772829 tttgaaactt 34772820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 323
Target Start/End: Complemental strand, 22198169 - 22198025
Alignment:
Q  180 ggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgt 278  Q
    |||||||| |||||  || ||||||| ||| || |||||| |||||||   |||||||||||||  |||| ||  |||| |  |||| ||||||||||||    
T  22198169 ggggtttcgccacttgtgcgattaggtgtcgggccttttatggtaggacgcgcagccctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgt 22198070  T
Q  279 gttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||   |||||||||||| ||| ||| |||||||||||| |||||    
T  22198069 gttccaacaatcaacatgtttttataccatttgcttttgtcactt 22198025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 323
Target Start/End: Original strand, 22239652 - 22239796
Alignment:
Q  180 ggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatgagaaagtgt 278  Q
    |||||||| |||||  || ||||||| ||| || |||||| |||||||   |||||||||||||  |||| ||  |||| |  |||| ||||||||||||    
T  22239652 ggggtttcgccacttgtgcgattaggtgtcgggccttttatggtaggacgcgcagccctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgt 22239751  T
Q  279 gttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||   |||||||||||| ||| ||| |||||||||||| |||||    
T  22239752 gttccaacaatcaacatgtttttataccatttgcttttgtcactt 22239796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 48539260 - 48539220
Alignment:
Q  283 tgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  48539260 tgacaatcaacatgcttttataccatttgcttttgacactt 48539220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 9266174 - 9266252
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagcc 236  Q
    ||||||||||| || | ||||||||| ||||||||||  || |||||||||| ||||||||||| |||||| ||| ||||    
T  9266174 aacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagggcttttactgtaggacaggaagcc 9266252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 34067869 - 34067902
Alignment:
Q  262 caaatatgagaaagtgtgttttgacaatcaacat 295  Q
    |||| |||||||||||||||||||||||||||||    
T  34067869 caaacatgagaaagtgtgttttgacaatcaacat 34067902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 40726501 - 40726574
Alignment:
Q  276 tgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||||| |||||||||||||| ||| ||| |||||| |||||||||||  | |||| || || |||||||||||    
T  40726501 tgtgttctgacaatcaacatgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgtt 40726574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 23793119 - 23793075
Alignment:
Q  255 aagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctt 299  Q
    |||||| | ||||||||||| | ||||||||||||||||||||||    
T  23793119 aagcggccgaatatgagaaaatatgttttgacaatcaacatgctt 23793075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 172 - 323
Target Start/End: Complemental strand, 6524 - 6373
Alignment:
Q  172 acttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaa-taaagcggtcaaatatga 270  Q
    ||||||| ||||||||||||||  || |||||||| || |  ||||||| |||||| || |||||||||||||||||| || ||||| || |||| ||||    
T  6524 acttgactggggtttcaccacttgtgggattaggg-tcggaccttttaccgtaggacagacagccctaaaagttgcgtcaagtaaagtggccaaacatga 6426  T
Q  271 gaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    ||||| ||||| |||||||||||||||||  ||| ||||||||||||||||||    
T  6425 gaaagcgtgttctgacaatcaacatgcttctataccatttgcttttgacactt 6373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 349
Target Start/End: Complemental strand, 10546 - 10373
Alignment:
Q  181 gggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtg 279  Q
    |||||||||||||| || ||||||||||  |||||||||| || ||| | ||||||||||||||||||| || ||||  || |||| |||| || | |||    
T  10546 gggtttcaccactcgtgggattaggggttggggcttttacagttggacaagcagccctaaaagttgcgtcaagtaaaatggccaaacatgataatgcgtg 10447  T
Q  280 ttttga----caatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    || |||    ||||||||||||||| ||| |||||||||||||||||| || |||| || ||||||||||||||    
T  10446 ttctgacaatcaatcaacatgcttttataccatttgcttttgacacttgtggcttcctagcaccagaggttgtt 10373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 49543 - 49426
Alignment:
Q  231 gcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgact 329  Q
    ||||||||||||||||| | ||| |||| |||||||| |||||||  ||||| ||||||||||| |||||| ||| ||||||||||||||||||  ||||    
T  49543 gcagccctaaaagttgcatcaaacaaagtggtcaaatgtgagaaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacactttcgact 49444  T
Q  330 tcgtaacaccagaggttg 347  Q
    || |||||||| ||||||    
T  49443 tcttaacaccaaaggttg 49426  T

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Target: scaffold1768 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 85 - 252
Alignment:
Q  157 aacatgcatgtatgaacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataa 255  Q
    |||||||||||||  ||||||| ||||||||||||||  || ||||| | ||| || ||||||| |||||| ||||||||||||||  ||||| ||  ||    
T  85 aacatgcatgtatagacttgactggggtttcaccacttgtgggattaagtgtcgggccttttactgtaggacaggcagccctaaaaactgcgtcaagcaa 184  T
Q  256 agcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    || || |||| |||||| |||| ||| |||| ||||||||||||| ||| ||||||  ||||||||||    
T  185 agtggccaaacatgagacagtgggttatgaccatcaacatgcttttataccatttgtgtttgacactt 252  T

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Target: scaffold0148 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 349
Target Start/End: Complemental strand, 33441 - 33263
Alignment:
Q  171 aacttgaccggggtttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgtaaat-aaagcggtcaaatatg 269  Q
    |||||||  |||||||||||||| ||| ||||||| ||| || |||||||||||||| ||||| || |||| || || | ||  |||| ||  ||| |||    
T  33441 aacttgattggggtttcaccacttatgggattaggtgtcgggccttttacggtaggacaggcaaccttaaa-gtggcatcaagcaaagtggctaaacatg 33343  T
Q  270 agaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagaggttgtt 349  Q
    |||||| ||||| |||||||||||||| ||| ||| ||||| ||||||||| ||  |  ||| |||||||||||||||||    
T  33342 agaaagcgtgttctgacaatcaacatgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgtt 33263  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 103254 - 103145
Alignment:
Q  214 cttttacggtaggataggcagccctaaaagttgcgtaaataaagc-ggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgc 312  Q
    ||||||| |||||| |||||||||| |||| ||||| ||  |||  || |||| | ||||||| |||| | ||||||||||||||||| ||| |||||||    
T  103254 cttttaccgtaggacaggcagccctcaaagctgcgtcaagtaagatggccaaacacgagaaagcgtgtct-gacaatcaacatgcttttataccatttgc 103156  T
Q  313 ttttgacactt 323  Q
    |||||||||||    
T  103155 ttttgacactt 103145  T

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Target: scaffold0470 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 7727 - 7641
Alignment:
Q  238 taaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttttgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    |||||||||||| ||||| ||  || ||| ||||||||| ||||| | |||||||||||| ||| | | ||||||||||||||||||    
T  7727 taaaagttgcgtcaaatagagtagttaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactt 7641  T

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Target: scaffold0224 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 323
Target Start/End: Original strand, 18293 - 18432
Alignment:
Q  184 tttcaccactcatgagattaggggtcagggcttttacggtaggataggcagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagtgtgttt 282  Q
    |||||| |||| || ||||| ||||| | ||||||| | ||||| |  || ||||||||||||| | ||| ||||||| |||| ||||||||  |||||     
T  18293 tttcactactcgtgggattacgggtcggagcttttatgataggacaaacaaccctaaaagttgcatcaaacaaagcggccaaacatgagaaac-gtgttc 18391  T
Q  283 tgacaatcaacatgctttcatagcatttgcttttgacactt 323  Q
    | |||||||||||| ||| ||  ||| ||||||||||||||    
T  18392 tcacaatcaacatgtttttatgtcatctgcttttgacactt 18432  T

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