View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14251_low_17 (Length: 322)
Name: NF14251_low_17
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 9434646 - 9434356
Alignment:
| Q |
21 |
gggatcggccctctcgttaccggcgctgttgagcaagtaatggaagcgatgcatgcgccagtgctcttcgagaaattcgaagtgcatggcaatatgaaag |
120 |
Q |
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| T |
9434646 |
gggatcggccctctcgttaccggcgctgttgagcaagtaatggaagcgatgcatgcgccagtgctcttcgagaaattcgaagtgcatggcaatatgaaag |
9434547 |
T |
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| Q |
121 |
cgattccatctgtagtgatggaatcgattaagaagaataaggtttgtttgaaaggtggattagcgactccgatgggtggtggtgttagttcgcttaattt |
220 |
Q |
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| T |
9434546 |
cgattccatctgaagtgatggaatcgattaagaagaataaggtttgtttgaaaggtggattagcgactccgatgggtggtggtgttagttcgcttaattt |
9434447 |
T |
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| Q |
221 |
gcagctgaggaaggagcttgatctttatgcttcgcttgtcaattgctttaatctggaaggattgactactaggcatgataatgttgatatt |
311 |
Q |
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| T |
9434446 |
gcagctgaggaaggagcttgatctttatgcttcgcttgtcaattgttttaatctggaaggattgactactaggcatgataatgttgatatt |
9434356 |
T |
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Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 31309141 - 31309394
Alignment:
| Q |
21 |
gggatcggccctctcgttaccggcgctgttgagcaagtaatggaagcgatgcatgcgccagtgctcttcgagaaattcgaagtgcatggcaatatgaaag |
120 |
Q |
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||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||| || ||||| | ||||||| |
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| T |
31309141 |
gggatcggcccactcgtaaccggcgccgttgagcaactaatggaagcgatgcacgcgccagtttacttcgagaaattcgacgtacatggtgacatgaaag |
31309240 |
T |
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| Q |
121 |
cgattccatctgtagtgatggaatcgattaagaagaataaggtttgtttgaaaggtggattagcgactccgatgggtggtggtgttagttcgcttaattt |
220 |
Q |
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| T |
31309241 |
ctgtacctacggaagttcttgaatcgatccgtaagaataaggtttgtcttaaaggtggattggttactcctatgggtggtggtgttagttcgcttaatgt |
31309340 |
T |
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| Q |
221 |
gcagctgaggaaggagcttgatctttatgcttcgcttgtcaattgctttaatct |
274 |
Q |
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||| ||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
31309341 |
tcagttgaggaaagagcttgatctttatgcttctcttgttaattgttttaatct |
31309394 |
T |
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