View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14251_low_20 (Length: 250)
Name: NF14251_low_20
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25817872 - 25817632
Alignment:
| Q |
1 |
caaactgaattgtcaaaacagtttggtaaaaaccaaaaaggtcaaataaatagttattttgaacaaccatgtactcttttctcctatcgatagttttgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
25817872 |
caaactgaattgtcaaaacagtttggtaaaaaccaaaaaggtcaactaaatagttattttgaacaaccatgtactcttttctcttatcgatagtttcgaa |
25817773 |
T |
|
| Q |
101 |
gcaaaatattaactaaaaccagtacaaaatctcaatgtaacaaactacttataacataaacaataaaatcttcagctgtcaaaagccaaacatttaagtc |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
25817772 |
gcaaaatattaactaaaaccagttcaaaatctcaaggtaacaaactacttataacataaacaataaaatcatcagctttcgaaagccaaacatttaagtc |
25817673 |
T |
|
| Q |
201 |
atatgtttatatgaaattattatacatgtctttattttctt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25817672 |
atatgtttatatgaaattattatacatgtctttattttctt |
25817632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 22567032 - 22566792
Alignment:
| Q |
1 |
caaactgaattgtcaaaacagtttggtaaaaaccaaaaaggtcaaataaatagttattttgaacaaccatgtactcttttctcctatcgatagttttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
22567032 |
caaactgaattgtcaaaacagtttggtaaaacccaaaaaggtcaactaaatagttattttgaacaaccttgtactcttttctcttatcgatagttttgaa |
22566933 |
T |
|
| Q |
101 |
gcaaaatattaactaaaaccagtacaaaatctcaatgtaacaaactacttataacataaacaataaaatcttcagctgtcaaaagccaaacatttaagtc |
200 |
Q |
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|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||| | |||||||||| ||| |
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| T |
22566932 |
gcaaaatattaactaaaaccagttcaaaatctcaaggtaacaaactacttataacataaacaataaaatcatcagttttcaaatgtcaaacatttaggtc |
22566833 |
T |
|
| Q |
201 |
atatgtttatatgaaattattatacatgtctttattttctt |
241 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
22566832 |
atatgtttatatgaaattattatatatttctttattttctt |
22566792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 15529971 - 15529733
Alignment:
| Q |
1 |
caaactgaattgtcaaaacagtttggtaaaaaccaaaaaggtcaaataaatagttattttgaacaaccatgtactcttttctcctatcgatagttttgaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||| |||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||| || |
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|
| T |
15529971 |
caaactgaattgtccaaacagtttggtaaaatcgaaaa-ggtcaactaaatagttatttcgaacaaccatgtactcttttctcttctcgatagtttctaa |
15529873 |
T |
|
| Q |
101 |
gcaaaatattaactaaaaccagtacaaaatctcaatgtaacaaactacttataacataaacaataaaatcttcagctgtcaaaagccaaacatttaagtc |
200 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| ||||| |||||||||| |||| |||| ||| | ||||||| |||||||||||||| |
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| T |
15529872 |
gcaaaatattaactaaaaccaacttaacatctcaatgtaacaa-ctactaataacataaaaaatataatcatcaattttcaaaagtcaaacatttaagtc |
15529774 |
T |
|
| Q |
201 |
atatgtttatatgaaattattatacatgtctttattttctt |
241 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15529773 |
atatgtttatatgaaattattacacatgtctttattttctt |
15529733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 2428456 - 2428536
Alignment:
| Q |
89 |
gatagttttgaagcaaaatattaactaaaaccagtacaaaatctcaatgtaacaaactacttataacataaacaataaaatc |
170 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||| |||||| ||||||||||||||| |
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|
| T |
2428456 |
gatagtttctaagcaaaatattaactaaaaccaactcaatatctcaaggtaac-aactaattataatataaacaataaaatc |
2428536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 20756155 - 20755915
Alignment:
| Q |
1 |
caaactgaattgtcaaaacagtttggtaaaaaccaaaaaggtcaaataaatagttattttgaacaaccatgtactcttttctcctatcgatagttttgaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||| ||||||| ||| |
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|
| T |
20756155 |
caaactgaattgataaaacagtttggtaaaaaccaaaaaggtcaactaaatagttattttgaacaaccctgtactcttttctcttattgatagttacgaa |
20756056 |
T |
|
| Q |
101 |
gcaaaatattaactaaaaccagtacaaaatctcaatgtaacaaactacttataacataaacaataaaatcttcagctgtcaaaagccaaacatttaagtc |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| |
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|
| T |
20756055 |
gcaaaatattaactaaaaccagttcaaaatctcaaggtaacaaactacttataacataaacaataaaatcatcagctttcgaaagccaaacatttaagtc |
20755956 |
T |
|
| Q |
201 |
atatgtttatatgaaattattatacatgtctttattttctt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20755955 |
atatgtttatatgaaattattatacatgtctttattttctt |
20755915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 17392686 - 17392469
Alignment:
| Q |
1 |
caaactgaattgtcaaaacagtttggtaaaaaccaaaaaggtcaaataaatagttattttgaacaaccatgtactcttttctcctatcgatagttttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||||| |||||||||||| || |
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|
| T |
17392686 |
caaactgaattgtcaaaacagtttggtaaaaaccaaaaaggtcaactaaacagttattttgaacaaacctgtactcttttctcttatcgatagtttcaaa |
17392587 |
T |
|
| Q |
101 |
gcaaaatattaactaaaaccagtacaaaatctcaatgtaacaaactacttataacataaacaataaaatcttcagctgtcaaaagccaaacatttaagtc |
200 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||| |
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|
| T |
17392586 |
gcaaaatattaactaaaacgagttcaaaatctcaaggtaacaaactacttataacataaacaataaaattatcaactttcaaaagtcaaacatttaagtc |
17392487 |
T |
|
| Q |
201 |
atatgtttatatgaaatt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17392486 |
atatgtttatatgaaatt |
17392469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 21655721 - 21655952
Alignment:
| Q |
6 |
tgaattgtcaaaacagtttggtaaaaaccaaaaaggtcaaataaatagttattttgaacaaccatgtactcttttctcctatcgatagttttgaagcaaa |
105 |
Q |
| |
|
|||||||||||||| || | |||||| || ||||||||| |||| ||||| || |||||||| || ||||||||||| |||||||||| ||||||| |
|
|
| T |
21655721 |
tgaattgtcaaaactgtgtagtaaaa-ccgtaaaggtcaactaaacagttaattcgaacaaccttgaactcttttctc---tcgatagtttctaagcaaa |
21655816 |
T |
|
| Q |
106 |
atattaactaaaaccagtacaaaatctcaatgtaacaaactacttataacataaacaataaaatcttcagctgtcaaaagccaaacatttaagtcatatg |
205 |
Q |
| |
|
||||||||||| |||| ||| |||| | |||||| ||||| |||||| || ||||| |||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
21655817 |
atattaactaagaccaactcaacatctatagctaacaa-ctactaataacaaaaccaatagaatcatcagctttcaaaagtcaaacatttaagtcatatg |
21655915 |
T |
|
| Q |
206 |
tttatatgaaattattataca-tgtctttattttctt |
241 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
21655916 |
tttatatgaaattattagacattgtctttattttctt |
21655952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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