View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14251_low_21 (Length: 241)
Name: NF14251_low_21
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 25817850 - 25818075
Alignment:
| Q |
1 |
aactgttttgacaattcagtttgacataattaatatttcttccatgaaacaggaaacctagaagctgttattcttcctaactaggtcattgtatatgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25817850 |
aactgttttgacaattcagtttgacataattaatatttcttccatgaaacaggaaaccaagaagctgttattcttcctaactaggtcattgtatatatga |
25817949 |
T |
|
| Q |
101 |
ttcatattgaattagaaggttgaaagtgttaggattaatttgcggctttgaaagatggacaatttggannnnnnnggttcagctattgttgcatgcaggt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
25817950 |
ttcatattgaattagaaagttgaaagtgttggggttaatttgcggctttgaaagatggacaatttggatttttttggttcagctgttgttgcgtgcaggt |
25818049 |
T |
|
| Q |
201 |
tggaaagtgcaattagttgaatgaag |
226 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
25818050 |
tggaaagtgcaattggttgaatgaag |
25818075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 22567010 - 22567215
Alignment:
| Q |
1 |
aactgttttgacaattcagtttgacataattaatatttcttccatgaa-acaggaaacctagaagctgttattcttcctaactaggtcattgtatatgtg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22567010 |
aactgttttgacaattcagtttgacataattaatatttcttccatgaacacagaaaaccaagaaggtgttattcttcctaactaggtcattgtatatgtg |
22567109 |
T |
|
| Q |
100 |
attcatattgaattagaaggttgaaagtgttaggattaatttgcggctttgaaagatggacaatttggannnnnnnggttcagctattgttgcatgcagg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
22567110 |
attcatattgaattagaaggttgaaagtgttggggttaatttgcggctatgaaagatggacaatttggatttttttggttcagctgttgttgcgtgcagg |
22567209 |
T |
|
| Q |
200 |
ttggaa |
205 |
Q |
| |
|
|||||| |
|
|
| T |
22567210 |
ttggaa |
22567215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 15530105 - 15530302
Alignment:
| Q |
24 |
acataattaatatttcttccatgaaacaggaaacctagaagctgttattcttcctaactaggtcattgtatatgtgattcatattgaattagaaggttga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
15530105 |
acataattaatatttcttccatgaaacaggaaactaagaagttgttattctttctaactaggtgattgtatatgtgattcttattgatttagaaggttga |
15530204 |
T |
|
| Q |
124 |
aagtgttaggattaatttgcggctttgaaagatggacaatttgga--nnnnnnnggttcagctattgttgcatgcaggttggaaagtgcaattagttg |
219 |
Q |
| |
|
||||||| | ||||||||||||| || ||||||||||||||| |||||| || ||||||| || |||||||||||||||||| |||| |
|
|
| T |
15530205 |
aagtgttggtgttaatttgcggctacgagggatggacaatttggatttttttttggttcaactgttgttgcgtgtaggttggaaagtgcaattggttg |
15530302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 20756133 - 20756358
Alignment:
| Q |
1 |
aactgttttgacaattcagtttgacataattaatatttcttccatgaaacaggaaacctagaagctgttattcttcctaactaggtcattgtatatgtga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
20756133 |
aactgttttatcaattcagtttgacataattaatatttcttccatgaaacaggaaaccaagaagctgttattcttcctaactaggtcattgtatatataa |
20756232 |
T |
|
| Q |
101 |
ttcatattgaattagaaggttgaaagtgttaggattaatttgcggctttgaaagatggacaatttggannnnnnnggttcagctattgttgcatgcaggt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
20756233 |
ttcatattgaattagaaagttgaaagtgttggggttaatttgcggctttgaaagatggacaatttggatttttttggttcagctgttgttgcgtgcaggt |
20756332 |
T |
|
| Q |
201 |
tggaaagtgcaattagttgaatgaag |
226 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
20756333 |
tggaaagtgcaattggttgaatgaag |
20756358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 21655642 - 21655505
Alignment:
| Q |
31 |
taatatttcttccatgaaacaggaaacctagaagctgttattcttcctaactaggtcattgtatatgtgattcatattgaattagaaggttgaaagtgtt |
130 |
Q |
| |
|
|||||||| |||||||||||| ||||| | ||| |||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21655642 |
taatatttattccatgaaacataaaaccaataagttgttgttcttcctaactaggtgattgcatatgtgattcagtttgaattagaaggttgaaagtgtt |
21655543 |
T |
|
| Q |
131 |
aggattaatttgcggctttgaaagatggacaatttgga |
168 |
Q |
| |
|
| |||| |||||||| ||||||||||||||| |||| |
|
|
| T |
21655542 |
ggtgttaacttgcggctatgaaagatggacaatgtgga |
21655505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 17392723 - 17392828
Alignment:
| Q |
114 |
agaaggttgaaagtgttaggattaatttgcggctttgaaagatggacaatttggannnnnnnggttcagctattgttgcatgcaggttggaaagtgcaat |
213 |
Q |
| |
|
||||||||||||||||| || |||||||| |||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
17392723 |
agaaggttgaaagtgttggggttaatttgtggctatgaaagatggacaatttggatttttttggttcagctgttgttgcctgcaggttggaaagtgcaat |
17392822 |
T |
|
| Q |
214 |
tagttg |
219 |
Q |
| |
|
|||||| |
|
|
| T |
17392823 |
tagttg |
17392828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17392664 - 17392727
Alignment:
| Q |
1 |
aactgttttgacaattcagtttgacataattaatatttcttccatgaaacaggaaacctagaag |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17392664 |
aactgttttgacaattcagtttgacataattaatatttcttccatgaaacaggaaaccaagaag |
17392727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University