View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14251_low_24 (Length: 206)
Name: NF14251_low_24
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 46630398 - 46630580
Alignment:
| Q |
13 |
accaaactgtttgtggttcaggtagtcatcagcagaattgaagttcaactgcttcttcagcaaacagaaatgtggaagagaataatgnnnnnnncattct |
112 |
Q |
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| T |
46630398 |
accaaaatttttgtggttcagttagtcatcagcagaatggaagttcaactgcttcttcagcaaacagaaatgtggaagagaataatgaaaaaaacattct |
46630497 |
T |
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| Q |
113 |
caatgacagttatcgatgcatgagtgtctcttgtgttaaaattgagaaatgtgagtctttcagcattaacataccacaggttc |
195 |
Q |
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| T |
46630498 |
caatgatagttatcgatgcatgagtgtctcttgtgttaaaattgagaaatgtgagtctttcagcattaacataccgcaggttc |
46630580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 46619904 - 46620081
Alignment:
| Q |
13 |
accaaactgtttgtggttcaggtagtcatcagcagaattgaagttcaactgcttcttcagcaaacagaaatgtggaagagaataatgnnnnnnncattct |
112 |
Q |
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| T |
46619904 |
accaaaatgtttgtggtccagttagtcatcatcagaatgaaaattcaact---tcttcagcagacagaagtgtggaagaggataatggaaaaagcattat |
46620000 |
T |
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| Q |
113 |
caatgacagttatcgatgcatgagtgtctcttgtgttaaaattgagaaatgtgagtctttcagcattaacataccacaggt |
193 |
Q |
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| T |
46620001 |
caacgacagctatcaacacacgagtgtttcttgtgtcaaagttgaaaaatctgaatctttcaccttcaacatacctcaggt |
46620081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 46642110 - 46642007
Alignment:
| Q |
60 |
actgcttcttcagcaaacagaaatgtggaagagaataatgnnnnnnncattctcaatgacagttatcgatgcatgagtgtctcttgtgttaaaattgaga |
159 |
Q |
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| T |
46642110 |
actgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttcaga |
46642011 |
T |
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| Q |
160 |
aatg |
163 |
Q |
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|||| |
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| T |
46642010 |
aatg |
46642007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 46638622 - 46638698
Alignment:
| Q |
13 |
accaaactgtttgtggttcaggtagtcatcagcagaattgaagttcaactgcttcttcagcaaacagaaatgtggaagag |
92 |
Q |
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| T |
46638622 |
accaaaatgtttgcggtccagttagtcatcagcagaatgaaaattcaa---cttcttcagcagacagaagtgtggaagag |
46638698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 18375686 - 18375504
Alignment:
| Q |
13 |
accaaactgtttgtggttcaggtagtcatcagcagaattgaagttcaactgcttcttcagcaaacagaaatgtggaagagaataatgnnnnnnncattct |
112 |
Q |
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|||||| | |||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18375686 |
accaaattttttgtggttcagttactcatcagcagaatggaagttcaactgcttcttcagcaaacagaaatgtggaagagaataataaaaacaacattca |
18375587 |
T |
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| Q |
113 |
caatgacagttatcgatgcatgagtgtctcttgtgttaaaattgagaaatgtgagtctttcagcattaacataccacaggttc |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18375586 |
caatgacagttatcgatgcatgagtgtctcttgtgttaaaattgagaaatgtgagtctttcagcattaacataccgcaggttc |
18375504 |
T |
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