View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14251_low_3 (Length: 616)
Name: NF14251_low_3
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 5242961 - 5243550
Alignment:
| Q |
1 |
caagtgcttgaggagaaggcaaagcaaggagcgaatgttgttcctggtggcaatggtggcaagcgccttgcggctcaggaacctcttgctgaaggttata |
100 |
Q |
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|||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||| |
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| T |
5242961 |
caagagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctcaggaacatcttgctgaaggttata |
5243060 |
T |
|
| Q |
101 |
cattagtttatgattaatgcatattattatatacttaaaatttgatactaatttttgatgtttaattaaaggaaggagcaagggagggcagacaaggaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243061 |
cattagtttatgattaatgcatattattatatacttaaaatttgatactaatttttggtgtttaattaaaggaaggagcaagggagggcagacaaggaag |
5243160 |
T |
|
| Q |
201 |
gagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtgctgaagaggaaggtattg |
300 |
Q |
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| T |
5243161 |
gagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtgctgaagaggaaggtattg |
5243260 |
T |
|
| Q |
301 |
atattgatgagtccaagttcaagacnnnnnnnnnnnnnnnnnnnaggagccagaacaagtgatccatcatcatcacctcttatgtgctagctaactttaa |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243261 |
atattgatgagtccaagttcaagac---tggtggtggtggtggtaggagccagaacaagtgatccatcatcatcacctcttatgtgctagctaactttaa |
5243357 |
T |
|
| Q |
401 |
tgtgtgtcaaaaactagtttgttttaggtcatgctgttagttggttatatatatagctaaccaatgatcaaa--nnnnnnnnnnnnnnntttagtttttc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5243358 |
tgtgtgtcaaaaactagtttgttttaggtcatgctgttagttggttatatatatagctaaccaatgatcaaagtgtgtgttgtgtgtgttttagtttttc |
5243457 |
T |
|
| Q |
499 |
taataaatagctagcatgtggtagtcaatgtttgtgtcttaggtttgtttattttccatataatgtcttgttatgactttctttggtggtagt |
591 |
Q |
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| T |
5243458 |
taataaatagctagcatgtggtagtcaatgtttgtgtcttaggtttgtttattttccatataatgtcttgttatgactttctttggtggtagt |
5243550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 183 - 319
Target Start/End: Complemental strand, 25523121 - 25522985
Alignment:
| Q |
183 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtg |
282 |
Q |
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||||||||||||||||| ||||| | |||| |||||||||||| || ||||| |||||||||||||| || |||||||| ||||| || | | |||||| |
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| T |
25523121 |
ggagggcagacaaggaaagagcagatggggagagaagggtatcaagaaatgggccgtaaaggaggactcagtactatggataagtctggtgaacaacgtg |
25523022 |
T |
|
| Q |
283 |
ctgaagaggaaggtattgatattgatgagtccaagtt |
319 |
Q |
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| T |
25523021 |
ctgctgaggaaggaatagacattgatgaatccaagtt |
25522985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 25523181 - 25523128
Alignment:
| Q |
183 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatggga |
236 |
Q |
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|||||||||||||||||| |||| ||||| ||||||| ||||| ||||||||| |
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| T |
25523181 |
ggagggcagacaaggaagcagcagttagggtcagaaggatatcaagagatggga |
25523128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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