View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14251_low_4 (Length: 557)
Name: NF14251_low_4
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Complemental strand, 39757904 - 39757363
Alignment:
| Q |
16 |
aggagaagcctttctgaccaaagcaaaaccaacatccctgaagcctgatagtgaaggcatccaactctttaacggtacacttgatatcttgttgttattg |
115 |
Q |
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| T |
39757904 |
aggagaagcctttctgaccaaagcaaaaccaacatccctgaagcctgatagtgaaggcatccaactcttcaacggtacacttgatatcttgttgttattg |
39757805 |
T |
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| Q |
116 |
tcatttttcatttgagtttcactacttgaaagaagtatggatttaatactattccatttccatacaaattcttctttttgtccaatattattgagacaat |
215 |
Q |
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| T |
39757804 |
tcatttttcatttgagtttcactacttgaaagaagtatggatttaatactattccatttccatacaaattcttctttttgtccaatattattgagacaat |
39757705 |
T |
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| Q |
216 |
tgggatgtgaaataaatggatttaatctttttgttacttcccaaggtgtaacgatgtataacgatctaacttgccttcttatgtgtagtttgctatcacg |
315 |
Q |
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| T |
39757704 |
tgggatgtgaaataaaaggatttaatctttttattacttcccaaggtgtaacgatgtataacgatctaacttgccttcttatgtgtagtttgctatcacg |
39757605 |
T |
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| Q |
316 |
gagagcttggtgaagttttgtgtcacttggtcaccattgtttgccatgagttgcagaaattttaccctcttcaggatccatattctcctttctagctatc |
415 |
Q |
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| T |
39757604 |
gagagcttggtgaagttttgtgtcacttggccaccattgtttgccatgagttgcagaaattttaccctcttcaggatccatattctcctttctagctatc |
39757505 |
T |
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| Q |
416 |
ttcacttctccaccattgctgatttgagctttaccacttatacgaggcacacatttaagtatactccaaagataatctgtcgcatctctaatatttacgc |
515 |
Q |
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| T |
39757504 |
ttcacttctccaccattgctgatttgagctttaccacttatacgaggcacacatttaagtatactccaaagataatctgtcgcatctctaatatttacgc |
39757405 |
T |
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| Q |
516 |
gactcgtggctaatgaaatatactgtagataatagaaaagta |
557 |
Q |
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| T |
39757404 |
gactcgtggctaatgaaatataccgtagataatagaaaagta |
39757363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 31 - 356
Target Start/End: Complemental strand, 39764964 - 39764639
Alignment:
| Q |
31 |
gaccaaagcaaaaccaacatccctgaagcctgatagtgaaggcatccaactctttaacggtacacttgatatcttgtt---gttattgtcatttttcatt |
127 |
Q |
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| T |
39764964 |
gaccacagaaaaaccagcacccccgaagcctgacagtgaaggcatccaattcttcaatggtacacttgatgtcttgttatcgtcatcgtcattattcaca |
39764865 |
T |
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| Q |
128 |
tgagtttcactacttgaaagaagtatggatttaatactattccatttccatacaaattcttctttttgtccaatattattgagacaattgggatgtgaaa |
227 |
Q |
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| T |
39764864 |
tgagtttcactacttgaaagaagtatggatttagcagtattccatttccataaaaattcttctttttgtctgatattatcaagacaaatgggaagtgaaa |
39764765 |
T |
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| Q |
228 |
taaatggatttaatctttttgttacttcccaaggtgtaacgatgtataacgatctaacttgccttcttatgtgtagtttgctatcacggagagcttggtg |
327 |
Q |
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| T |
39764764 |
taaaaggatttaatctttttgttacgtcccaaggtgtattggtgtataaagatccaattcgcctgcttatg---agtttgctatcatgaatagtttgctg |
39764668 |
T |
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| Q |
328 |
aagttttgtgtcacttggtcaccattgtt |
356 |
Q |
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| T |
39764667 |
aagttctgcatcacttggccaccattgtt |
39764639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 429 - 556
Target Start/End: Complemental strand, 39763933 - 39763803
Alignment:
| Q |
429 |
cattgctgatttgagctttaccacttatacga---ggcacacatttaagtatactccaaagataatctgtcgcatctctaatatttacgcgactcgtggc |
525 |
Q |
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| T |
39763933 |
cattgctgatttgagctttaccacttatatgatgaggcacacatttaagtatattccacacataatctgtcgcttctctaatatttatgtgactcgtggt |
39763834 |
T |
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| Q |
526 |
taatgaaatatactgtagataatagaaaagt |
556 |
Q |
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| T |
39763833 |
taatgaaacatattgtgaatagtagaaaagt |
39763803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 39764385 - 39764324
Alignment:
| Q |
133 |
ttcactacttgaaagaagtatggatttaatactattccatttccatacaaattcttcttttt |
194 |
Q |
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| T |
39764385 |
ttcactacttgaaggaagcgtggttttgagactattccatttccatataaattcttcctttt |
39764324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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