View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14251_low_5 (Length: 551)
Name: NF14251_low_5
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 9 - 532
Target Start/End: Original strand, 48017489 - 48018013
Alignment:
| Q |
9 |
aagaaggacgtaagtggcagaaacaagaatggaaatggctcaacaacaattttatatttacgtacaagtaaagaatatgtaacatgaaactagctatcag |
108 |
Q |
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| T |
48017489 |
aagaaggacgtaagtggcagaaacaagaatggaaatggctcaacaacaattttatatttacgtacaagtaaagaatatgtaacatgaaactagctatcag |
48017588 |
T |
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| Q |
109 |
agaaagatgacttggacgtgaattaactagctaattaattttagaattatactacatatatataattaagtactaa-ctggaatgaaagaaatagtgatt |
207 |
Q |
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| T |
48017589 |
agaaagatgacttggacgtgaattaactagctaattaattttagaattatactacatatatataattaagtactaaactggaatgaaagaaatagtgatg |
48017688 |
T |
|
| Q |
208 |
atcacgagtttaatataatcatttgatgatcacgagcattgtggattgttgccaggaccaccatagtaaaagtatgtgccccatttgttgttgtaggagc |
307 |
Q |
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| T |
48017689 |
atcaccagtttaatataatcatttgatgatcacgagcattgtggattgttgccagggccaccatagtaaaagtatgtgccccatttgttgttgtaggagc |
48017788 |
T |
|
| Q |
308 |
tcttgatattgtaacagtttttgttctgggctaaggttaagatgttggtcgcggaggtgagactgttgtcggtgtctacgatctcaaggttcctgaagta |
407 |
Q |
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| T |
48017789 |
tcttgatattgtaacagtttttgttctgggctaaggttaagatgttggtcgcggaggtgagactgttgtcggtgtctacgatctcaaggttcctgaagta |
48017888 |
T |
|
| Q |
408 |
gcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggccattggcgcgactgttcactacctcgccaccccat |
507 |
Q |
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| T |
48017889 |
gcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggccattggcgcgactgttcactacctcgccaccccat |
48017988 |
T |
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| Q |
508 |
tggaccatggtggcacggtcggcta |
532 |
Q |
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| T |
48017989 |
tggaccatggtggcacggtcggcta |
48018013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 388 - 521
Target Start/End: Complemental strand, 35409829 - 35409696
Alignment:
| Q |
388 |
atctcaaggttcctgaagtagcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggccattggcgcgactgt |
487 |
Q |
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||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||||||| |||| | || || || |
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| T |
35409829 |
atctcaaggttccgaaagtagcttgcttttccgaaaccatcctcggcaaagtggccggaacccatctgagtggaggtgtgtcggccgtcggtccgtgagt |
35409730 |
T |
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| Q |
488 |
tcactacctcgccaccccattggaccatggtggc |
521 |
Q |
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| T |
35409729 |
tcaccacctcgccaccccattctaccatggtggc |
35409696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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