View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14251_low_6 (Length: 476)
Name: NF14251_low_6
Description: NF14251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14251_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 30872483 - 30872940
Alignment:
| Q |
8 |
tttccattccgtagattgtccacaacttgaagaagatgaaaatttcaccttaaaatccctatttaccttaacaaccgtatcatcattttctaaaggagta |
107 |
Q |
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| T |
30872483 |
tttccattccgtagattgtccacaacttgaagaagatgaaaatttcaccttaaaatccctattcaccttaacaaccgtatcatcattttctaaaggagtt |
30872582 |
T |
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| Q |
108 |
aaaataacagataacccttgtgcaaaatcagtagtttcttgacccacatataaagggcatgaaccgtttttattcgtcaacgtgacacgacctccaaaat |
207 |
Q |
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| T |
30872583 |
aaaataacagataacccttgtccaaaatcagtagtttcttgacccacatataaagggcatgaaccgtttttatttaccaaagtgatacgacctccaaaat |
30872682 |
T |
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| Q |
208 |
cggatacatctgatcttatgtaatactttcggccactctcgagaggacgacctgttaagtcgagaacttcttcattttcaggttgtgctgatgttggtat |
307 |
Q |
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| T |
30872683 |
cggatacatctgatcttatgtaatactttcggccactctcaagaggacgacctgttaagtcgagaacttcttcattttcaggttgtgctgatgttggtat |
30872782 |
T |
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| Q |
308 |
ggtcatgaaaaaccataacataaggctaaggcttgtgattttgatcattcttgttgtcatggttgtgtgtataagtgaattttaaaaggagattttggac |
407 |
Q |
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| T |
30872783 |
ggtcatgaaaagccataacataaggctaaggcttgtgattttgatcattcttgttgtcatggttgtgtgtataagtgaattttaaaaggagattttggac |
30872882 |
T |
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| Q |
408 |
tatgtttatgttgtagctatgtatggcttagtatttatagtgtatgatattgtatatt |
465 |
Q |
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| T |
30872883 |
tatgtttatgttgtagctatgtatggcttagtatttatagtgtatgatattgtatatt |
30872940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 30902720 - 30903087
Alignment:
| Q |
8 |
tttccattccgtagattgtccacaacttgaagaagatgaaaatttcaccttaaaatccctatttaccttaacaaccgtatcatcattttctaaaggagta |
107 |
Q |
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||||||||| || |||||| ||||| ||||||||| ||||||||||||||||||||||||| | |||||| ||| |||| || || | ||||||||| |
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| T |
30902720 |
tttccattcagtggattgtacacaaattgaagaagctgaaaatttcaccttaaaatccctactatccttaataactttatcttctttcgcaaaaggagta |
30902819 |
T |
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| Q |
108 |
aaaataacagataacccttgtgcaaaatcagtagtttcttgacccacatataaagggcatgaaccgtttttattcgtcaacgtgacacgacctccaaaat |
207 |
Q |
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| T |
30902820 |
aaaataacgggtaacccttttccaagatctgtattttcttgacctacatataaagggcatgaaccgtttctatctattaaagtgaaacggccaccactat |
30902919 |
T |
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| Q |
208 |
cggatacatctgatcttatgtaatactttcggccactctcgagaggacgacctgttaagtcgagaacttcttcattttcaggttgtgctgatgttggtat |
307 |
Q |
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| T |
30902920 |
cggttatagctggttttatgtaatactctttgccacgttcaagaggatggccttttgtgtcaagaattttttcattttcggattgtgccaatgtttttat |
30903019 |
T |
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| Q |
308 |
ggtcatgaaaaaccataacataaggctaaggcttgtgattttgatcattcttgttgtcatggttgtgt |
375 |
Q |
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| T |
30903020 |
ggacatgaaaagacataacataaggctaaggcttgtaattttgattaatgttgttgacatggttgtgt |
30903087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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