View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14252_high_1 (Length: 448)
Name: NF14252_high_1
Description: NF14252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14252_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 16324538 - 16324126
Alignment:
| Q |
15 |
cacagacaggttcctaccctataacctcaattgactatgcaaatcaagtcatatacatttcagatcccaccatgtcaacatgttcttgtactctacctag |
114 |
Q |
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| T |
16324538 |
cacacacaggttcctaccctattacctcaattgactatgcaaatcaagtcatatacatttcagatcccaccatgtcaacatgttcttgtactctacctag |
16324439 |
T |
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| Q |
115 |
caaaggcttcggcttagattggaacgcaccatttactttcgatgatagcaccatattcgctttagtagattgttcgatgaactcatcatcgatatgcaaa |
214 |
Q |
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| T |
16324438 |
caaaggcttcggcttagattggaacgcaccatttactttcgatgatagcaccatattcgctttagtagattgttcgatgaactcatcatcgatatgcaaa |
16324339 |
T |
|
| Q |
215 |
tcaagaagttatgatgatggaagcaattctaagcttcaatgtgatcaaaatacacaaatttgtgatgttatgtattcttgtaggcctattagtactaata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16324338 |
tcaagaagttatgatgatggaagcaattctaagcttcaatgtgatcaaaatacacaaatttgtgatgttatgtattcttgtaggcctattagtactaata |
16324239 |
T |
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| Q |
315 |
ttaaccttccgatttcgacatgttgtgtttatacaccggttaatcttggtccagcttttgatatggatcttcaaaagcttcaatgcagttcatatacagg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16324238 |
ttaaccttccgatttcgacatgttgtgtttatacaccggttaatcttggtccagcttttgatatggatcttcagaagcttcaatgcagttcatatacagg |
16324139 |
T |
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| Q |
415 |
tttttacaattac |
427 |
Q |
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||||||||||||| |
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| T |
16324138 |
tttttacaattac |
16324126 |
T |
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