View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14252_low_2 (Length: 378)
Name: NF14252_low_2
Description: NF14252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14252_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 14860311 - 14860656
Alignment:
| Q |
14 |
catcacgaataattttaatttgctttcttccacaaacacaaatcattggcacaattctctaagttttcaacaataggtaaacatgtagtcaaaccccaac |
113 |
Q |
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| T |
14860311 |
catcacgaataattttaatttgctttcttccacgaacacaaatcattggcacaattctctaacttttcaacaataggtaaacatgtagtcaaacccc--- |
14860407 |
T |
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| Q |
114 |
tatcagttacaacatcacgaatacatggttcaatgcaccatgcattctcaaatttaaagttactcatgggttgcaccaaattttgagttggttcctaatt |
213 |
Q |
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| T |
14860408 |
tataagttacaacatcacgaatacatggttcaatgcaccatgcattctcaaatttaaagttactcatgggctgcaccaaattttgagttggttcct---t |
14860504 |
T |
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| Q |
214 |
agaaagtaggatcagatagtgatcagaagcaa----tactaaattctatacttttgcactaggaaaaggacgtaaccattcattattagcaatagctcga |
309 |
Q |
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| T |
14860505 |
agtaagtaggatca-atagtgattagaagcaagtgctactaaattctatacttttgcactaggaaaaggacgtaaccattcattattagcaatagctcga |
14860603 |
T |
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| Q |
310 |
tccaatctttcttctactactctcggggtacccaaacttttgaatcaagtaaa |
362 |
Q |
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| T |
14860604 |
tccaatctttcttctaatactctcgaggtacccaaacttttgaatcgagtaaa |
14860656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 14860210 - 14860321
Alignment:
| Q |
25 |
attttaatttgctttcttccacaaacacaaatcattggcacaattctctaagttttcaacaataggtaaacatgtagtcaaaccccaactatcagttaca |
124 |
Q |
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| T |
14860210 |
attttaatttgctttcttccacgaacacaaatcatcggcacaattctctaacttttctacaataggtaaacctgaagtcaaaccctaactatcagttaca |
14860309 |
T |
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| Q |
125 |
acatcacgaata |
136 |
Q |
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| T |
14860310 |
acatcacgaata |
14860321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 30041685 - 30041748
Alignment:
| Q |
108 |
cccaactatcagttacaacatcacgaatacatggttcaatgcaccatgcattctcaaatttaaa |
171 |
Q |
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| T |
30041685 |
cccagctatcagaaacaacatcatgaatacatggttcaacacaccaagcattctcaaatttaaa |
30041748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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