View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14253_high_10 (Length: 301)
Name: NF14253_high_10
Description: NF14253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14253_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 11821178 - 11820894
Alignment:
| Q |
1 |
agttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaacgtaagcaact |
100 |
Q |
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| T |
11821178 |
agttggacacacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccaccttgaacgtaagcaact |
11821079 |
T |
|
| Q |
101 |
tcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11821078 |
tcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtccac |
11820979 |
T |
|
| Q |
201 |
cacttctgattttaatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttggagttactat |
285 |
Q |
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| T |
11820978 |
cacttctgattttgatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttggagttactat |
11820894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11835186 - 11835470
Alignment:
| Q |
1 |
agttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaacgtaagcaact |
100 |
Q |
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||||||||| |||||||||||||| |||||||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11835186 |
agttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttgaatataagcaact |
11835285 |
T |
|
| Q |
101 |
tcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtccac |
200 |
Q |
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|| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | | || ||||||||||| ||||||||||||| |
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| T |
11835286 |
tcattttttatatcaacattgattgttcttagattaaacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtccac |
11835385 |
T |
|
| Q |
201 |
cacttctgattttaatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttggagttactat |
285 |
Q |
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| T |
11835386 |
cgcttcttattttgatttgaatgttgacttgcttagcacatattacagtggattggacatgcgaaggttgttttggagtgactat |
11835470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 11787211 - 11787292
Alignment:
| Q |
8 |
caaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaa |
89 |
Q |
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|||| ||||||||| ||||||||||| | ||| ||||||| ||||||||||||||||| || | |||||||| ||||||| |
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| T |
11787211 |
caaagaccagcagggaaaccatgaacatcacttttctcatgtattctataataaacttcgccgatagtagcaccggcttgaa |
11787292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 11933538 - 11933488
Alignment:
| Q |
169 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
219 |
Q |
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|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
11933538 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11933488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 11946759 - 11946709
Alignment:
| Q |
169 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
219 |
Q |
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|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
11946759 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11946709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 11933702 - 11933638
Alignment:
| Q |
5 |
ggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc |
69 |
Q |
| |
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|||||||| || || |||||||||||||| ||||| || |||| ||||||||| |||| |||||| |
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| T |
11933702 |
ggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc |
11933638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 11946923 - 11946859
Alignment:
| Q |
5 |
ggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc |
69 |
Q |
| |
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|||||||| || || |||||||||||||| ||||| || |||| ||||||||| |||| |||||| |
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| T |
11946923 |
ggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc |
11946859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 38090655 - 38090579
Alignment:
| Q |
5 |
ggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcacc |
81 |
Q |
| |
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|||||||| ||||| |||||||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
38090655 |
ggacaaaccccagctggaaaaccatgaacactactaatctcagaaatcctataataaacttcaccaattgtagcacc |
38090579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 38125487 - 38125411
Alignment:
| Q |
7 |
acaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccag |
83 |
Q |
| |
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|||||| ||||||||||| |||||||| ||||||||||| | || ||||||||||| ||||||||| ||||||||| |
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| T |
38125487 |
acaaaccccagcaggaaagccatgaactttactcttctcccatatcctataataaacctcaccaagtatagcaccag |
38125411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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