View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14253_low_13 (Length: 203)
Name: NF14253_low_13
Description: NF14253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14253_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 29320993 - 29320822
Alignment:
| Q |
15 |
caaaggcaccatcaaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaatt |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29320993 |
caaaggcaccatcaaaattgtttgttagcgttcatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaatt |
29320894 |
T |
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| Q |
115 |
atctatcttttacaaattacacagaattgcacataggaatgaaatgtttgaaaatacattcatattcatact |
186 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29320893 |
atcaatcttttacaaataacacagaattgcacataggaatgaaatgtttgaaaatacattcatattcatact |
29320822 |
T |
|
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Target: chr8 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 9337367 - 9337537
Alignment:
| Q |
16 |
aaaggcaccatcaaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9337367 |
aaaggcaccatcaaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatacgagtaaattacaaatta |
9337466 |
T |
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| Q |
116 |
tctatcttttacaaattacacagaattgcacataggaatgaaatgtttgaaaatacattcatattcatact |
186 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9337467 |
tctatcttttacaaactacacagagttgcacataggaatgaaatgtttgaaaatacattcatattcatact |
9337537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 40149902 - 40149731
Alignment:
| Q |
15 |
caaaggcaccatcaaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaatt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
40149902 |
caaaggcaccatcaaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaaacttcaatcaaacatacgagtaaattacaaatt |
40149803 |
T |
|
| Q |
115 |
atctatcttttacaaattacacagaattgcacataggaatgaaatgtttgaaaatacattcatattcatact |
186 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40149802 |
atctatcttttacaaactacacagagttgcacataggaatgaaatgtttgaaaatacattcatattcatact |
40149731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 38477224 - 38477114
Alignment:
| Q |
16 |
aaaggcaccatcaaaattgtttg-ttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaatt |
114 |
Q |
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|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |
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| T |
38477224 |
aaaggcaccatcaaaattgttttcttagcgttcatttcttattcttaaagagaagaataagaatcaatcttcaatcaagcatacgagtaatttacaaatt |
38477125 |
T |
|
| Q |
115 |
atctatctttt |
125 |
Q |
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||||||||||| |
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|
| T |
38477124 |
atctatctttt |
38477114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 14417253 - 14417312
Alignment:
| Q |
129 |
aattacacagaattgcacataggaatgaaatgtttgaaaatac---attcatattcatac |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14417253 |
aattacacagaattgcacataggaatgaaatgtttgaaaatacataattcatattcatac |
14417312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 14270856 - 14270915
Alignment:
| Q |
129 |
aattacacagaattgcacataggaatgaaatgtttgaaaatac---attcatattcatac |
185 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
14270856 |
aattacacagaattgcacatcggaatgaaatgtttgaaaatacataattcatattcatac |
14270915 |
T |
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