View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14253_low_3 (Length: 439)
Name: NF14253_low_3
Description: NF14253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14253_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 194 - 420
Target Start/End: Original strand, 42103540 - 42103766
Alignment:
| Q |
194 |
aatctgtaaaacttgacgcatttaaacaacaagtgcttgaatttctgtagttcctggaagnnnnnnngatgaaacaaacacaacacaacaaataagtcga |
293 |
Q |
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| T |
42103540 |
aatctgtaaaacttgatgcatttaaacaacaagtgcttgaatttctgtagttcctggaagaaaaaaagatgaaacaaacacaacacaacaaataagtcga |
42103639 |
T |
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| Q |
294 |
gtcacaattcgcagaaactaattagaagcataatttaagagaggaataacacttacagcttctgctgaattactagttcaataatctgctacccgccaaa |
393 |
Q |
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| T |
42103640 |
gtcacaattcgcagtaactaattagaagcataatttaagagaggaataacacttacagcttctgctgaattactagttcaataatctgctacccgccaaa |
42103739 |
T |
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| Q |
394 |
gtactgtatcatttcatcgtcgcccat |
420 |
Q |
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| T |
42103740 |
gtactgtatcatttcatcgtcacccat |
42103766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 42103310 - 42103486
Alignment:
| Q |
13 |
cataggtgaccaaaaacactgataatttattaaatagtttagaagcaagcattgcagcattcctatcccaaagaaattaacctaaatattcagccagccc |
112 |
Q |
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| T |
42103310 |
cataggtgaccaaaaacactgataatttattaaataatttagaagcaagcattgcatcattcctatctcaaagaaattaacctaaatattcagccagccc |
42103409 |
T |
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| Q |
113 |
attaacaattgatacattaattgaagaaaattcatcggtttttcaagttccgaaaatttaagacttgtcaatgttaa |
189 |
Q |
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| T |
42103410 |
attaacaattgatacattaattgaagaaaattcatcggttcttcaagttccgaaaatttaagacttgtcaatgttaa |
42103486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 42112528 - 42112582
Alignment:
| Q |
59 |
aagcattgcagcattcctatcccaaagaaattaacctaaatattcagccagccca |
113 |
Q |
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| T |
42112528 |
aagcattgcagcaatcctatcccaaagaaattaacctaaatattcagccagccca |
42112582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 42112734 - 42112804
Alignment:
| Q |
182 |
aatgttaatatcaatctgtaaaacttgacgcatttaaacaacaagtgcttgaatttctgtagttcctggaa |
252 |
Q |
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| T |
42112734 |
aatgttaatatcaatctgcgaaccttcacgcattcgaacaacaagtccttgaatttctgtagttcctggaa |
42112804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 419
Target Start/End: Original strand, 42112854 - 42112955
Alignment:
| Q |
319 |
aagcataatttaagagaggaataacacttacagcttctgctgaattact-agttcaataatctgctacccgccaaagtactgtatcatttcatcgtcgcc |
417 |
Q |
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|||||||||||||| || ||||| |||||||||||||||||| | ||| | ||||||||||| ||| | ||||||||||| |||||||||||||| || |
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| T |
42112854 |
aagcataatttaagtgaagaatagaacttacagcttctgctgagtcactaatttcaataatcttctatgctccaaagtactgcatcatttcatcgtcacc |
42112953 |
T |
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| Q |
418 |
ca |
419 |
Q |
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|| |
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| T |
42112954 |
ca |
42112955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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