View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14253_low_4 (Length: 434)
Name: NF14253_low_4
Description: NF14253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14253_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 39877556 - 39877138
Alignment:
| Q |
1 |
aaactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataacacctcttaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39877556 |
aaactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataacacctcttaatat |
39877457 |
T |
|
| Q |
101 |
cctacaggtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39877456 |
cctacaggtgtggatttgaagtgaggatacttcctaaaa--ttagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaat |
39877359 |
T |
|
| Q |
201 |
gaacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39877358 |
gaacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgt |
39877259 |
T |
|
| Q |
301 |
gttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggannnnnnnnngcagagatttttgtcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39877258 |
gttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggatttttttttgcagagatttttgtcaa |
39877159 |
T |
|
| Q |
401 |
tttttcccctgactctggttc |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39877158 |
tttttcccctgactctggttc |
39877138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 2 - 421
Target Start/End: Complemental strand, 44780784 - 44780373
Alignment:
| Q |
2 |
aactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataacacctcttaatatc |
101 |
Q |
| |
|
||||||||||| |||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44780784 |
aactccagattatcagtcctttgtttttttgg-----gttcatcctttaacctatgtgtatgaatgaatggatctctctttgataacacctcttaatatc |
44780690 |
T |
|
| Q |
102 |
ctacaggtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaatg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44780689 |
ctacaggtgtggatttgaagtgaggatacttcc--aaaaattagaatgactcaagaagcattcagtaacacaagagatggtgtctggaatctccagaatg |
44780592 |
T |
|
| Q |
202 |
aacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44780591 |
aacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcggg |
44780492 |
T |
|
| Q |
302 |
ttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggannnnnnnnngcagagatttttgtcaat |
401 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||| |
|
|
| T |
44780491 |
ttctactacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaatttgagttctagga-gtttttttgcagaggtttttgtcaat |
44780393 |
T |
|
| Q |
402 |
ttttcccctgactctggttc |
421 |
Q |
| |
|
|||| |||||||| |||||| |
|
|
| T |
44780392 |
tttttccctgactttggttc |
44780373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 108 - 352
Target Start/End: Original strand, 2898520 - 2898762
Alignment:
| Q |
108 |
gtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaatgaacaga |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
2898520 |
gtgtggatttgaagtgcggatacttcctaaaa--ttagaacgactcaagaagcattcggtaacacaagagatggtgtttggaatctccagaatgaacaaa |
2898617 |
T |
|
| Q |
208 |
caaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtgttctaa |
307 |
Q |
| |
|
| |||||||| |||||| ||| |||||||||||||| |||||||| || || ||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
2898618 |
ccaaagaaaggacagctactgctttcttaagagttgatgatgaacagattaaaatgtttgagaatcgtgtgaggcagattcttatgtcttcgggttctac |
2898717 |
T |
|
| Q |
308 |
tacattcacaaaaattgtcaataagtggaatacagctttaatagg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2898718 |
tacattcacaaaaattgtcaataagtggaatacagctttaatagg |
2898762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University