View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14253_low_5 (Length: 400)
Name: NF14253_low_5
Description: NF14253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14253_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 35172210 - 35172574
Alignment:
| Q |
16 |
aaaggagtgataattaggaacactaatggaagcgaaacattaaagttaggctccattatgcagctaaacaagaatgattggtttggctttgaaatacaag |
115 |
Q |
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| T |
35172210 |
aaaggagtgataattaggaacactaatggaagcgaaacattaaagttaggctccattatgcagctaaacaagaatgattggtttggctttgaaatacaag |
35172309 |
T |
|
| Q |
116 |
cagcttagtggtttatatagaaatatgtttcatggacaccccttttatatacacccgcgacacatggttaatcatatacaaaaatatagttaattcagtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35172310 |
cagcttagtggtttatatagaaatatgtttcatggacaccccttttacatacacacgcgacacatggttaatcatatacaaaaatatagttaattgagtt |
35172409 |
T |
|
| Q |
216 |
ggatagatatttaattcaatttacgttgaaaattgtcgttaaatttcatgtagcttagttaaccataattttagttgtgaattgaattaaccgtctactc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35172410 |
ggatagatatttaattcaatttacgttgaaaattgtcgttaaatttcatatagcttagttaactataattttagttgtgaattgaattaaccgtctactc |
35172509 |
T |
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| Q |
316 |
tagttattcaaccatattttttaacatgattaacaaagtgtattgagcggatgtacaaataatgt |
380 |
Q |
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| T |
35172510 |
tagttattcaacaacattttttaacatgattaacaaggtgtattgagtggatgtacaaataatgt |
35172574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 10257596 - 10257520
Alignment:
| Q |
173 |
cgacacatggttaatcatatacaaaaatatagttaattcagttggatagatatttaattcaatttacgttgaaaatt |
249 |
Q |
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| T |
10257596 |
cgacacctggttaatcacgtataaaaatgtggttaattcaattggatagataattaattcaactcacgttgaaaatt |
10257520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 10181226 - 10181150
Alignment:
| Q |
173 |
cgacacatggttaatcatatacaaaaatatagttaattcagttggatagatatttaattcaatttacgttgaaaatt |
249 |
Q |
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| T |
10181226 |
cgacacctagttaatcatgtataaaaatgtggttaattcaattgaatagataattaattcaagtcacgttgaaaatt |
10181150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 314
Target Start/End: Complemental strand, 25651474 - 25651301
Alignment:
| Q |
140 |
atgtttcatggacaccccttttat-atacacccgcgacacatggttaatcatatacaaaaatatagttaattcagttggatagatatttaattcaattta |
238 |
Q |
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| T |
25651474 |
atgtttcatggacacctattttttcatacacctgcgccacttgattaatcaggtgcaaaaatattgttaattcaattaagaatatggttaattcaatcca |
25651375 |
T |
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| Q |
239 |
cgttgaaaattgtcgttaaatttcatgtagcttagttaaccataattttagttgtgaattgaattaaccgtctact |
314 |
Q |
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| T |
25651374 |
cgttaaaaattgtcgttaa--ttcatgcagttaaattaaccagaattttgactgtgaattgaattaaccatctact |
25651301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 10029873 - 10029797
Alignment:
| Q |
173 |
cgacacatggttaatcatatacaaaaatatagttaattcagttggatagatatttaattcaatttacgttgaaaatt |
249 |
Q |
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|||||| | |||| |||| ||||||||| | ||||||| | ||| ||||||| ||||||||| | |||||||||||| |
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| T |
10029873 |
cgacacctagttagtcatgtacaaaaatgtggttaattgaattgaatagataattaattcaactcacgttgaaaatt |
10029797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 10124794 - 10124718
Alignment:
| Q |
173 |
cgacacatggttaatcatatacaaaaatatagttaattcagttggatagatatttaattcaatttacgttgaaaatt |
249 |
Q |
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|||||| | |||| |||| || |||||| | ||||||||| ||| ||||||| ||||||||| | |||||||||||| |
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| T |
10124794 |
cgacacctagttagtcatgtataaaaatgtggttaattcaattgaatagataattaattcaactcacgttgaaaatt |
10124718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 8283850 - 8283894
Alignment:
| Q |
195 |
aaaaatatagttaattcagttggatagatatttaattcaatttac |
239 |
Q |
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| T |
8283850 |
aaaaatatggttaattcagttgaatagatgattaattcaatttac |
8283894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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