View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14253_low_6 (Length: 334)
Name: NF14253_low_6
Description: NF14253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14253_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 39877533 - 39877837
Alignment:
| Q |
15 |
caaaggcctgacaatctggagtttgttaatgatggtatcccttcttagacaaccttgctgataaaggaacatattcatcatcatcatcttcagattcata |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39877533 |
caaaggcctgacaatctggagtttgttaatgatggtatcccttcttagacaaccttgctgataaaggaacatcatcatcatcatcatcttcagattcata |
39877632 |
T |
|
| Q |
115 |
gtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatcatcaccaacacataaatttgggtta |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877633 |
gtcttcacgagaatctgaatgcgatgtttttttatcgaatgatgtgagccatttaaaattgaagcgtccttcatcatcaccaacacataaatttgggtta |
39877732 |
T |
|
| Q |
215 |
ttagaagcctcgacaacatccatgattcaactatagaaaactttaaactctcagctattacacaaacccctcaaaatcctgggaagaaaagataaaagct |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877733 |
ttagaagcctcgacaacatccatgattcaactatagaaaactttaaactctcagctattacacaaacccctcaaaatcctgggaagaaaagataaaagct |
39877832 |
T |
|
| Q |
315 |
tcaac |
319 |
Q |
| |
|
||||| |
|
|
| T |
39877833 |
tcaac |
39877837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 39422853 - 39423083
Alignment:
| Q |
90 |
catcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
39422853 |
catcatcatcatcttcagattcatagtctttacaagaatctgaatgcgatgtttttttatcgaatgatgtgtgccatttaaaattgaagtgtccttcatc |
39422952 |
T |
|
| Q |
190 |
atcaccaacacataaatttgggttattagaagcctcgacaacatccatgattcaactatagaaaactttaaactctcagctattacacaaacccctcaaa |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
39422953 |
atcaccaacacataaatttgggttatcagaagcctcaacaacatccatgattgaactatagaaaactttaaactctcagctataacacaaacacctcaaa |
39423052 |
T |
|
| Q |
290 |
atcctgggaagaaaagataaaagcttcaact |
320 |
Q |
| |
|
|||||||||| ||| | |||||||||||||| |
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|
| T |
39423053 |
atcctgggaacaaaggttaaaagcttcaact |
39423083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 55 - 320
Target Start/End: Original strand, 39416668 - 39416929
Alignment:
| Q |
55 |
cttcttagacaaccttgctgataaaggaacatattcatcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaat |
154 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||| ||| |||||||||||| ||||||| |
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|
| T |
39416668 |
cttcttagcaaaccttgctgacaaaggaacat---catcatcatcatcatcagattcaaagtcttcacgtgaagctgaatgcgatgtttttttatcgaat |
39416764 |
T |
|
| Q |
155 |
gatgtgagccatttaaaattgaagcgtccttcatcatcaccaacacataaatttgggttattagaagcctcgacaacatccatgattcaactatagaaaa |
254 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||||||||| ||| |||| |||| ||||||||| ||||||||||| ||| |||||||| ||| |
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|
| T |
39416765 |
gatgcaagccatttaaaattgaagtgctcttcatcatcaccaacacaaaaaattggcttatcagaagcctcaacaacatccatcattgaactatag-aaa |
39416863 |
T |
|
| Q |
255 |
ctttaaactctcagctattacacaaacccctcaaaatcctgggaagaaaagataaaagcttcaact |
320 |
Q |
| |
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|| ||||||||| | ||||| | || ||||||||||||| |||||||||| |||| |||||||| |
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|
| T |
39416864 |
ctgtaaactctcggatattaaatttacacctcaaaatcctgtgaagaaaagacaaaaccttcaact |
39416929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 39488380 - 39488540
Alignment:
| Q |
90 |
catcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||| ||| || ||||||| |
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|
| T |
39488380 |
catcatcatcatcttcagattcatagtcttcacgagaagctgaatgcgatgtttttttatcaaatgatgcgagccatttaaaatttaagtgttcttcatc |
39488479 |
T |
|
| Q |
190 |
atcaccaacacataaatttgggttattagaagcctcgacaacatccatgattcaactatagaaa |
253 |
Q |
| |
|
||||||| |||| || ||| | ||||||||||| | ||| |||||| |||||| |||||||| |
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|
| T |
39488480 |
atcaccaccacaaaattttagcttattagaagctt---caaaatccatcattcaagtatagaaa |
39488540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 253
Target Start/End: Original strand, 39474588 - 39474744
Alignment:
| Q |
94 |
atcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatcatca |
193 |
Q |
| |
|
||||||||||||||||||| |||||| |||| || ||||||| ||| |||||||||||| |||||||||||||| || || |||||||||| |
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| T |
39474588 |
atcatcatcttcagattcaaagtcttgacgaaaaggtgaatgcaatgtacttttatcgaatgatgttagccatttaaaatttaaatgttcttcatcatct |
39474687 |
T |
|
| Q |
194 |
ccaacacataaatttgggttattagaagcctcgacaacatccatgattcaactatagaaa |
253 |
Q |
| |
|
|||||||| |||||||| |||| |||||||| ||| |||||| ||| ||||||||||| |
|
|
| T |
39474688 |
ccaacacaaaaatttggcttatcagaagcct---caatatccattattgaactatagaaa |
39474744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 39135970 - 39135818
Alignment:
| Q |
148 |
atcgaatgatgtgagccatttaaaattgaagcgtccttcatcatcaccaacacataaatttgggttattagaagcctcgacaacatccatgattcaacta |
247 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||| |||||||||||||| || ||||| |||| || |||||| |||| |||||| ||||||||| |
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|
| T |
39135970 |
atcgaatgatgcaagccatttaaaatttaag---tattcttcatcaccaacacaaaactttggcttatgagtagcctcaacaatatccatcattcaacta |
39135874 |
T |
|
| Q |
248 |
tagaaaactttaaactctcagctattacacaaacccctcaaaatcctgggaagaaaa |
304 |
Q |
| |
|
||| ||||| ||| |||||||| |||||| ||| |||||| ||||||||||||||| |
|
|
| T |
39135873 |
tag-aaactataacctctcagcaattacaagaacacctcaacatcctgggaagaaaa |
39135818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 253
Target Start/End: Complemental strand, 39151598 - 39151416
Alignment:
| Q |
65 |
aaccttgctgataaaggaacatattcatcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagcc |
164 |
Q |
| |
|
||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |||||| ||||||| |||| ||| | |||| | || |
|
|
| T |
39151598 |
aaccttgctgacaaaggaacat---catcatcttcatcttcagattcaaagtcttcgcgagaagctgaatgagatgtttttatctcgcacgatgcaatcc |
39151502 |
T |
|
| Q |
165 |
atttaaaattgaagcgtccttcatcatcaccaacacataaatttgggttattagaagcctcgacaacatccatgattcaactatagaaa |
253 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| || ||| | ||||||||||| | ||| |||||| ||||||||| ||||| |
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|
| T |
39151501 |
gtttaaagttgaagcgtccttcatcatcacctacacaaaattttagcttattagaagctt---caaaatccatcattcaactacagaaa |
39151416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 320
Target Start/End: Complemental strand, 39457872 - 39457642
Alignment:
| Q |
90 |
catcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatc |
189 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||| ||||||||||| ||| ||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
39457872 |
catcaccatcaccttcagattcaaagtcttcagtggaagatgaatgcgatgtttttttatcaaatgatgcaagccatttaaaattgaaagtttcttcatc |
39457773 |
T |
|
| Q |
190 |
atcacca---acacataaatttgggttattagaagcctcgacaacatccatgattcaactatagaaaactttaaactctcagctattacacaaacccctc |
286 |
Q |
| |
|
|||| || ||||| || |||| |||| ||||||||| || | |||| ||||||||||||||| |||| | | | ||||||| ||| |||| |
|
|
| T |
39457772 |
atcatcacgaacacaaaactttgacttatcagaagcctc---aaaacccatcattcaactatagaaattgttaacttttggggtattacatgaacacctc |
39457676 |
T |
|
| Q |
287 |
aaaatcctgggaagaaaagataaaagcttcaact |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39457675 |
aaaatcctgggaagaaaagataaaagcttcaact |
39457642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 39469893 - 39469846
Alignment:
| Q |
152 |
aatgatgtgagccatttaaaattgaagcgtccttcatcatcaccaaca |
199 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
39469893 |
aatgatgtgagccatttaaaattcaagagttcttcatcatcaccaaca |
39469846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 19806312 - 19806194
Alignment:
| Q |
189 |
catcaccaacacataaatttgggttattagaagcctcgacaacatccatgattcaactatagaaaactttaaactctcagctattacacaaacccctcaa |
288 |
Q |
| |
|
||||||||||||| || ||||| |||| | ||||||| ||||||||||| ||||||||||||| || ||| ||||||| |||||| ||| |||||| |
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|
| T |
19806312 |
catcaccaacacagaactttggcttatcaaaagcctcaacaacatccat---tcaactatagaaa-ctgtaacttctcagcaattacaagaacacctcaa |
19806217 |
T |
|
| Q |
289 |
aatcctgggaagaaaagataaaa |
311 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
19806216 |
aatcctgggaagaaaaaataaaa |
19806194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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