View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14253_low_8 (Length: 313)
Name: NF14253_low_8
Description: NF14253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14253_low_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 580672 - 580370
Alignment:
| Q |
11 |
aaggagcacagacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaagatgtatcaacaaaccaagcgcagtttttagcctc |
110 |
Q |
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| T |
580672 |
aaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaagatgtatcaacaaaccaagcgcagtttttagcctc |
580573 |
T |
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| Q |
111 |
aaattttgttaggagggggaattcaagatgaacattgcgccaagatttgggtgagttggtgttaaagtcgattccacacaagtttagaattttcaagttt |
210 |
Q |
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| T |
580572 |
aaattttgttaggagagggaattcaagatgaacattgcgccaagatttgggtgagtcggtgttaaagttgattccacacaagttgagaattttcaagttt |
580473 |
T |
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| Q |
211 |
cgaaatagaatatatttgctgggagcgggaacatcaacggaattaaaagaatttcgaagcaatttcaattcttcatcgtacataggaacattaataaagg |
310 |
Q |
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| T |
580472 |
cgaaatacaatatatttgctgggagcgggaacatcaacggaattaaaagaatttcgaagcaatttcaattcttcatcgtacataggaacattaataaagg |
580373 |
T |
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| Q |
311 |
aaa |
313 |
Q |
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| T |
580372 |
aaa |
580370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 1200807 - 1200763
Alignment:
| Q |
87 |
aaaccaagcgcagtttttagcctcaaattttgttaggagggggaa |
131 |
Q |
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| T |
1200807 |
aaaccaatcacagtttttggcctcaaattttgttaggagtgggaa |
1200763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 8192727 - 8192831
Alignment:
| Q |
27 |
atgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaagatgtatcaacaaaccaagcgcagtttttagcctcaaattttgttaggagg |
126 |
Q |
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| T |
8192727 |
atgttcaatggaaatactttcaagtagaggagcatctatagagacccaagttgcatcaacaaaccaagcgcagtttttggtctcaaattttgttagaagt |
8192826 |
T |
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| Q |
127 |
gggaa |
131 |
Q |
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| T |
8192827 |
gggaa |
8192831 |
T |
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