View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_high_11 (Length: 358)
Name: NF14254_high_11
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 49590526 - 49590184
Alignment:
| Q |
1 |
atagaatgatgactattttatcaatggcacatggattaaaggttaccctagagaaacgttcttgagaccaattgactcattgattcgattagtaacatat |
100 |
Q |
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| T |
49590526 |
atagaatgatgactattttatcaatggcacatggattaaaggttaccgtagagaaacgttcttgagaccaattgactcattgattcgattagtaacatat |
49590427 |
T |
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| Q |
101 |
gtcgaacaatgagataaaaacttcatgtggattgtattttaatacataaatgtagttctaaatcataatagttatagtggataagcgttgaatctgagaa |
200 |
Q |
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| T |
49590426 |
gtcgaacaatgagataaaaacttcatgtggattgtattttaatacataaatgtagttctaaatcataatagttatagtggataagcgttgaatctgagaa |
49590327 |
T |
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| Q |
201 |
tggtcagaaattgatcaaacgtttgctttatatgtactgtaacataaactactgttttaagttgcaaatggcaatcatgaggtgtatgttctctttgttt |
300 |
Q |
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| T |
49590326 |
tggtcagaaattgatcaaacgtttgctttatatttactgtaacataaactactgttttaggttgcaaatggcaatcatgaggtgtatgttctctttgttt |
49590227 |
T |
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| Q |
301 |
tataactaatgctaataataacaatgctttcttgtgatgatgt |
343 |
Q |
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| T |
49590226 |
tataactaatgctaataataacaatgctttcttgtgatgatgt |
49590184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7237884 - 7237950
Alignment:
| Q |
1 |
atagaatgatgactattttatcaatggcacatggattaaaggttaccctagagaaacgttcttgaga |
67 |
Q |
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| T |
7237884 |
atagaatgatgactattttatcaatggcacatggattaagggttaccgttgagaaacgttcttgaga |
7237950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7242336 - 7242402
Alignment:
| Q |
1 |
atagaatgatgactattttatcaatggcacatggattaaaggttaccctagagaaacgttcttgaga |
67 |
Q |
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| T |
7242336 |
atagaatgatgactattttatcaatggcacatggattaagggttaccgttgagaaacgttcttgaga |
7242402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 7237983 - 7238082
Alignment:
| Q |
73 |
tgactcattgattcgattagtaacatatgtcgaacaatgagataaaaacttcatgtggattgtattttaatacat---aaatgtagttctaaatcataat |
169 |
Q |
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| T |
7237983 |
tgactcattgattcaattagtaacagatgttgaataatgacctaagaacttcttgtgaattatatttttatacataaaaaatgtagttctaaatcataat |
7238082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 7242435 - 7242534
Alignment:
| Q |
73 |
tgactcattgattcgattagtaacatatgtcgaacaatgagataaaaacttcatgtggattgtattttaatacat---aaatgtagttctaaatcataat |
169 |
Q |
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|||||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| ||| |||||| |||||| |||||||||||||||||||||| |
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| T |
7242435 |
tgactcattgattcaattagtaacagatgttgaataatgacctaagaacttcttgtgaattatatttttatacataaaaaatgtagttctaaatcataat |
7242534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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