View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14254_high_18 (Length: 263)

Name: NF14254_high_18
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14254_high_18
NF14254_high_18
[»] chr4 (2 HSPs)
chr4 (1-82)||(4117709-4117790)
chr4 (121-241)||(4117534-4117668)
[»] chr5 (3 HSPs)
chr5 (3-82)||(21157014-21157093)
chr5 (121-241)||(21156839-21156973)
chr5 (171-215)||(39481161-39481205)
[»] chr1 (1 HSPs)
chr1 (169-233)||(47933927-47933991)
[»] scaffold0317 (1 HSPs)
scaffold0317 (178-231)||(19233-19286)
[»] chr7 (1 HSPs)
chr7 (3-75)||(2440657-2440729)
[»] chr6 (2 HSPs)
chr6 (3-75)||(6301785-6301857)
chr6 (3-75)||(6308595-6308667)
[»] chr8 (2 HSPs)
chr8 (174-233)||(30849775-30849834)
chr8 (1-61)||(30849850-30849910)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4117790 - 4117709
Alignment:
Q  1 tctttcttctctccgccttctctccgttgctgccttctctgtttccgccgtcgcatcattccgacatctgtgaaattactgc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  4117790 tctttcttctctccgccttctctccgttgctgccttctctgtttccgccgtagcatcattctgacatctgtgaaattactgc 4117709  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 4117668 - 4117534
Alignment:
Q  121 gtgaagagtgtgaggcagagagaacaaatacggaggcgagag--ggtgaggacggtgg------------tggtgacggtgagatgatatggtgatagat 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||            ||||||||||||||||||||||||||||||    
T  4117668 gtgaagagtgtgaggcagagagaacaaatacagaggcgagagagggtgaggacggtggcaaaggtggtggtggtgacggtgagatgatatggtgatagat 4117569  T
Q  207 gacgttaatggcgttcagatctgagagcgacgtgc 241  Q
    |||||||||||||||||||| ||||||||| ||||    
T  4117568 gacgttaatggcgttcagatttgagagcgaggtgc 4117534  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 21157093 - 21157014
Alignment:
Q  3 tttcttctctccgccttctctccgttgctgccttctctgtttccgccgtcgcatcattccgacatctgtgaaattactgc 82  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21157093 tttcttctctccgccttctctctgtttctgccttctctgtttccgccgtcgcatcattccgacatctgtgaaattactgc 21157014  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 21156973 - 21156839
Alignment:
Q  121 gtgaagagtgtgaggcagagagaacaaatacggaggcgagag--ggtgaggacggtgg------------tggtgacggtgagatgatatggtgatagat 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||            ||||||||||||||||||||||||||||||    
T  21156973 gtgaagagtgtgaggcagagagaacaaatacagaggcgagagagggtgaggacggtggcaacggtggtggtggtgacggtgagatgatatggtgatagat 21156874  T
Q  207 gacgttaatggcgttcagatctgagagcgacgtgc 241  Q
    ||||||||||||||||||||||||| |||| ||||    
T  21156873 gacgttaatggcgttcagatctgagtgcgaggtgc 21156839  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 39481161 - 39481205
Alignment:
Q  171 cggtggtggtgacggtgagatgatatggtgatagatgacgttaat 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  39481161 cggtggtggtgacggtgagatgagatggtgatagatgacgttaat 39481205  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 47933927 - 47933991
Alignment:
Q  169 gacggtggtggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgagag 233  Q
    |||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||    
T  47933927 gacgatggtggtgacggtgagatgagatggtaatagacgacgttaatggtgttcagatctgagag 47933991  T

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Target: scaffold0317 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 19286 - 19233
Alignment:
Q  178 ggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgag 231  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  19286 ggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagatttgag 19233  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 2440657 - 2440729
Alignment:
Q  3 tttcttctctccgccttctctccgttgctgccttctctgtttccgccgtcgcatcattccgacatctgtgaaa 75  Q
    ||||||||||| ||||||||||| | || ||||||||||||| ||||||||  |||||||||||| |||||||    
T  2440657 tttcttctctctgccttctctccctcgccgccttctctgttttcgccgtcgagtcattccgacatatgtgaaa 2440729  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 6301857 - 6301785
Alignment:
Q  3 tttcttctctccgccttctctccgttgctgccttctctgtttccgccgtcgcatcattccgacatctgtgaaa 75  Q
    ||||||||||| ||||||||||| | || ||||||||||||| ||||||||  |||||||||||| |||||||    
T  6301857 tttcttctctctgccttctctccctcgccgccttctctgttttcgccgtcgattcattccgacatatgtgaaa 6301785  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 6308667 - 6308595
Alignment:
Q  3 tttcttctctccgccttctctccgttgctgccttctctgtttccgccgtcgcatcattccgacatctgtgaaa 75  Q
    ||||||||||| ||||||||||| | || ||||||||||||| ||||||||  |||||||||||| |||||||    
T  6308667 tttcttctctctgccttctctccctcgccgccttctctgttttcgccgtcgattcattccgacatatgtgaaa 6308595  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 30849834 - 30849775
Alignment:
Q  174 tggtggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgagag 233  Q
    |||||||||||||||||||| ||||| |||||||| |||||||| |||| ||||||||||    
T  30849834 tggtggtgacggtgagatgagatggtaatagatgatgttaatggtgttctgatctgagag 30849775  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30849910 - 30849850
Alignment:
Q  1 tctttcttctctccgccttctctccgttgctgccttctctgtttccgccgtcgcatcattc 61  Q
    ||||||||||||||||||||||||| | || |||||||||||||  | |||||| ||||||    
T  30849910 tctttcttctctccgccttctctccctcgccgccttctctgtttttgtcgtcgcgtcattc 30849850  T

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